Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0537 and Dsui_0538 are separated by 55 nucleotides Dsui_0538 and Dsui_0539 are separated by 9 nucleotides Dsui_0539 and Dsui_0540 overlap by 4 nucleotides Dsui_0540 and Dsui_0541 overlap by 8 nucleotides
Dsui_0537: Dsui_0537 - conserved protein of DIM6/NTAB family, at 541,897 to 542,436
_0537
Dsui_0538: Dsui_0538 - hypothetical protein, at 542,492 to 543,235
_0538
Dsui_0539: Dsui_0539 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 543,245 to 544,129
_0539
Dsui_0540: Dsui_0540 - L-threonine-O-3-phosphate decarboxylase, at 544,126 to 545,130
_0540
Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094
_0541
Position (kb) 543
544
545 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 542.280 kb on - strand, within Dsui_0537 at 542.334 kb on - strand, within Dsui_0537 at 542.577 kb on + strand, within Dsui_0538 at 542.672 kb on + strand, within Dsui_0538 at 542.783 kb on + strand at 542.912 kb on - strand, within Dsui_0538 at 543.092 kb on + strand, within Dsui_0538 at 543.273 kb on + strand at 543.295 kb on + strand at 543.351 kb on + strand, within Dsui_0539 at 543.375 kb on + strand, within Dsui_0539 at 543.609 kb on - strand, within Dsui_0539 at 543.609 kb on - strand, within Dsui_0539 at 543.615 kb on + strand, within Dsui_0539 at 543.615 kb on + strand, within Dsui_0539 at 543.623 kb on - strand, within Dsui_0539 at 543.750 kb on + strand at 543.786 kb on - strand, within Dsui_0539 at 543.788 kb on + strand, within Dsui_0539 at 543.830 kb on + strand, within Dsui_0539 at 543.952 kb on - strand, within Dsui_0539 at 544.214 kb on - strand at 544.329 kb on + strand, within Dsui_0540 at 544.337 kb on - strand, within Dsui_0540 at 544.352 kb on + strand at 544.484 kb on + strand, within Dsui_0540 at 544.526 kb on + strand, within Dsui_0540 at 544.556 kb on - strand, within Dsui_0540 at 544.672 kb on - strand, within Dsui_0540 at 544.937 kb on - strand, within Dsui_0540 at 544.965 kb on + strand, within Dsui_0540 at 544.965 kb on + strand at 544.973 kb on - strand, within Dsui_0540 at 545.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 542,280 - Dsui_0537 0.71 -1.4 542,334 - Dsui_0537 0.81 -0.1 542,577 + Dsui_0538 0.11 -0.9 542,672 + Dsui_0538 0.24 -0.6 542,783 + +3.9 542,912 - Dsui_0538 0.56 -1.5 543,092 + Dsui_0538 0.81 +0.8 543,273 + +2.9 543,295 + +0.6 543,351 + Dsui_0539 0.12 +0.5 543,375 + Dsui_0539 0.15 +0.5 543,609 - Dsui_0539 0.41 -0.6 543,609 - Dsui_0539 0.41 +0.5 543,615 + Dsui_0539 0.42 -0.2 543,615 + Dsui_0539 0.42 -0.1 543,623 - Dsui_0539 0.43 -0.1 543,750 + +3.9 543,786 - Dsui_0539 0.61 -1.2 543,788 + Dsui_0539 0.61 -0.6 543,830 + Dsui_0539 0.66 -0.2 543,952 - Dsui_0539 0.80 +0.9 544,214 - -0.2 544,329 + Dsui_0540 0.20 -0.4 544,337 - Dsui_0540 0.21 +0.4 544,352 + +0.4 544,484 + Dsui_0540 0.36 -0.2 544,526 + Dsui_0540 0.40 -0.1 544,556 - Dsui_0540 0.43 -0.1 544,672 - Dsui_0540 0.54 +2.9 544,937 - Dsui_0540 0.81 -0.1 544,965 + Dsui_0540 0.83 +0.5 544,965 + +0.9 544,973 - Dsui_0540 0.84 -0.4 545,035 - +0.4
Or see this region's nucleotide sequence