Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0533 and Dsui_0534 are separated by 7 nucleotides Dsui_0534 and Dsui_0535 are separated by 31 nucleotides Dsui_0535 and Dsui_0536 are separated by 10 nucleotides Dsui_0536 and Dsui_0537 are separated by 121 nucleotides Dsui_0537 and Dsui_0538 are separated by 55 nucleotides
Dsui_0533: Dsui_0533 - cobyrinic acid a,c-diamide synthase, at 538,485 to 539,792
_0533
Dsui_0534: Dsui_0534 - hypothetical protein, at 539,800 to 540,027
_0534
Dsui_0535: Dsui_0535 - hypothetical protein, at 540,059 to 540,304
_0535
Dsui_0536: Dsui_0536 - hemerythrin-like metal-binding domain-containing protein, at 540,315 to 541,775
_0536
Dsui_0537: Dsui_0537 - conserved protein of DIM6/NTAB family, at 541,897 to 542,436
_0537
Dsui_0538: Dsui_0538 - hypothetical protein, at 542,492 to 543,235
_0538
Position (kb) 540
541
542 Strain fitness (log2 ratio) -1
0
1
2
3 at 539.409 kb on - strand, within Dsui_0533 at 539.521 kb on + strand, within Dsui_0533 at 539.577 kb on - strand at 539.689 kb on + strand at 539.719 kb on - strand at 540.029 kb on - strand at 540.029 kb on - strand at 540.039 kb on + strand at 540.094 kb on - strand, within Dsui_0535 at 540.199 kb on + strand, within Dsui_0535 at 540.444 kb on + strand at 540.537 kb on + strand, within Dsui_0536 at 540.671 kb on - strand, within Dsui_0536 at 540.734 kb on + strand, within Dsui_0536 at 540.767 kb on - strand, within Dsui_0536 at 540.787 kb on - strand, within Dsui_0536 at 540.943 kb on + strand, within Dsui_0536 at 540.999 kb on - strand, within Dsui_0536 at 540.999 kb on - strand at 541.001 kb on + strand at 541.009 kb on - strand, within Dsui_0536 at 541.155 kb on + strand, within Dsui_0536 at 541.259 kb on + strand, within Dsui_0536 at 541.503 kb on - strand, within Dsui_0536 at 541.711 kb on - strand at 541.860 kb on - strand at 541.876 kb on - strand at 541.918 kb on + strand at 541.931 kb on - strand at 541.970 kb on + strand, within Dsui_0537 at 542.047 kb on - strand, within Dsui_0537 at 542.087 kb on + strand at 542.089 kb on + strand, within Dsui_0537 at 542.280 kb on - strand, within Dsui_0537 at 542.334 kb on - strand, within Dsui_0537 at 542.577 kb on + strand, within Dsui_0538 at 542.672 kb on + strand, within Dsui_0538
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 539,409 - Dsui_0533 0.71 +1.1 539,521 + Dsui_0533 0.79 -0.9 539,577 - +2.9 539,689 + -0.7 539,719 - +1.4 540,029 - +0.8 540,029 - +0.0 540,039 + -0.8 540,094 - Dsui_0535 0.14 +1.1 540,199 + Dsui_0535 0.57 -0.0 540,444 + +0.6 540,537 + Dsui_0536 0.15 -0.8 540,671 - Dsui_0536 0.24 -0.0 540,734 + Dsui_0536 0.29 -0.3 540,767 - Dsui_0536 0.31 -1.1 540,787 - Dsui_0536 0.32 +0.9 540,943 + Dsui_0536 0.43 -0.8 540,999 - Dsui_0536 0.47 +1.2 540,999 - +1.4 541,001 + +1.2 541,009 - Dsui_0536 0.48 +0.7 541,155 + Dsui_0536 0.57 +1.2 541,259 + Dsui_0536 0.65 -0.7 541,503 - Dsui_0536 0.81 +0.9 541,711 - -0.1 541,860 - -0.7 541,876 - -0.1 541,918 + +1.5 541,931 - -0.2 541,970 + Dsui_0537 0.14 +0.6 542,047 - Dsui_0537 0.28 +0.9 542,087 + -0.2 542,089 + Dsui_0537 0.36 +2.2 542,280 - Dsui_0537 0.71 -1.4 542,334 - Dsui_0537 0.81 -0.1 542,577 + Dsui_0538 0.11 -0.9 542,672 + Dsui_0538 0.24 -0.6
Or see this region's nucleotide sequence