Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0442 and Dsui_0443 are separated by 6 nucleotides Dsui_0443 and Dsui_0444 are separated by 176 nucleotides Dsui_0444 and Dsui_0445 are separated by 24 nucleotides Dsui_0445 and Dsui_0446 are separated by 1 nucleotides
Dsui_0442: Dsui_0442 - monofunctional biosynthetic peptidoglycan transglycosylase, at 449,612 to 450,304
_0442
Dsui_0443: Dsui_0443 - shikimate 5-dehydrogenase, at 450,311 to 451,126
_0443
Dsui_0444: Dsui_0444 - hemerythrin-like metal-binding domain-containing protein, at 451,303 to 451,761
_0444
Dsui_0445: Dsui_0445 - TonB family protein, at 451,786 to 452,673
_0445
Dsui_0446: Dsui_0446 - exoribonuclease R, at 452,675 to 454,588
_0446
Position (kb) 451
452 Strain fitness (log2 ratio) -2
-1
0
1
2 at 451.165 kb on + strand at 451.174 kb on - strand at 451.199 kb on - strand at 451.209 kb on - strand at 451.266 kb on + strand at 451.305 kb on - strand at 451.357 kb on - strand, within Dsui_0444 at 451.377 kb on + strand, within Dsui_0444 at 451.397 kb on - strand, within Dsui_0444 at 451.436 kb on + strand, within Dsui_0444 at 451.481 kb on - strand, within Dsui_0444 at 451.491 kb on + strand, within Dsui_0444 at 451.499 kb on - strand, within Dsui_0444 at 451.529 kb on + strand, within Dsui_0444 at 451.583 kb on - strand, within Dsui_0444 at 451.585 kb on + strand, within Dsui_0444 at 451.622 kb on + strand, within Dsui_0444 at 451.622 kb on + strand, within Dsui_0444 at 451.629 kb on - strand, within Dsui_0444 at 451.665 kb on + strand, within Dsui_0444 at 451.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 451,165 + +2.1 451,174 - -2.0 451,199 - +0.2 451,209 - -0.9 451,266 + +1.2 451,305 - +0.6 451,357 - Dsui_0444 0.12 -0.4 451,377 + Dsui_0444 0.16 +0.4 451,397 - Dsui_0444 0.20 +0.7 451,436 + Dsui_0444 0.29 -0.0 451,481 - Dsui_0444 0.39 +0.9 451,491 + Dsui_0444 0.41 +0.7 451,499 - Dsui_0444 0.43 +0.7 451,529 + Dsui_0444 0.49 -0.7 451,583 - Dsui_0444 0.61 +2.5 451,585 + Dsui_0444 0.61 +0.3 451,622 + Dsui_0444 0.69 +1.1 451,622 + Dsui_0444 0.69 -0.8 451,629 - Dsui_0444 0.71 +0.6 451,665 + Dsui_0444 0.79 -0.3 451,749 + -0.4
Or see this region's nucleotide sequence