Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g31

Experiment: m.b. Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g29 and HP15_p42g30 are separated by 29 nucleotidesHP15_p42g30 and HP15_p42g31 are separated by 13 nucleotidesHP15_p42g31 and HP15_p42g32 are separated by 144 nucleotidesHP15_p42g32 and HP15_p42g33 overlap by 4 nucleotidesHP15_p42g33 and HP15_p42g34 are separated by 20 nucleotides HP15_p42g29: HP15_p42g29 - hypothetical protein, at 25,386 to 25,562 _p42g29 HP15_p42g30: HP15_p42g30 - YacC protein, at 25,592 to 26,452 _p42g30 HP15_p42g31: HP15_p42g31 - conserved hypothetical protein, secreted, at 26,466 to 26,819 _p42g31 HP15_p42g32: HP15_p42g32 - hypothetical protein, at 26,964 to 27,095 _p42g32 HP15_p42g33: HP15_p42g33 - protein containing resolvase N-terminal domain, at 27,092 to 27,727 _p42g33 HP15_p42g34: HP15_p42g34 - DNA-binding protein, at 27,748 to 28,131 _p42g34 Position (kb) 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1at 25.520 kb on + strand, within HP15_p42g29at 25.528 kb on - strand, within HP15_p42g29at 25.530 kb on + strand, within HP15_p42g29at 25.530 kb on + strand, within HP15_p42g29at 25.530 kb on + strand, within HP15_p42g29at 25.530 kb on + strand, within HP15_p42g29at 25.530 kb on + strand, within HP15_p42g29at 25.535 kb on + strand, within HP15_p42g29at 25.535 kb on + strand, within HP15_p42g29at 25.538 kb on - strand, within HP15_p42g29at 25.538 kb on - strand, within HP15_p42g29at 25.538 kb on - strand, within HP15_p42g29at 25.579 kb on + strandat 25.605 kb on - strandat 25.617 kb on + strandat 25.617 kb on + strandat 25.630 kb on + strandat 25.633 kb on + strandat 25.637 kb on - strandat 25.674 kb on - strandat 25.696 kb on - strand, within HP15_p42g30at 25.696 kb on - strand, within HP15_p42g30at 25.701 kb on - strand, within HP15_p42g30at 25.752 kb on - strand, within HP15_p42g30at 25.768 kb on + strand, within HP15_p42g30at 25.768 kb on + strand, within HP15_p42g30at 25.882 kb on - strand, within HP15_p42g30at 25.908 kb on + strand, within HP15_p42g30at 25.933 kb on - strand, within HP15_p42g30at 25.947 kb on - strand, within HP15_p42g30at 25.985 kb on + strand, within HP15_p42g30at 26.005 kb on + strand, within HP15_p42g30at 26.006 kb on - strand, within HP15_p42g30at 26.006 kb on - strand, within HP15_p42g30at 26.013 kb on - strand, within HP15_p42g30at 26.074 kb on + strand, within HP15_p42g30at 26.137 kb on + strand, within HP15_p42g30at 26.150 kb on - strand, within HP15_p42g30at 26.162 kb on - strand, within HP15_p42g30at 26.183 kb on + strand, within HP15_p42g30at 26.242 kb on + strand, within HP15_p42g30at 26.250 kb on - strand, within HP15_p42g30at 26.290 kb on + strand, within HP15_p42g30at 26.290 kb on + strand, within HP15_p42g30at 26.303 kb on + strand, within HP15_p42g30at 26.337 kb on + strand, within HP15_p42g30at 26.343 kb on + strand, within HP15_p42g30at 26.409 kb on + strandat 26.462 kb on - strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.485 kb on + strandat 26.493 kb on - strandat 26.493 kb on - strandat 26.493 kb on - strandat 26.605 kb on + strand, within HP15_p42g31at 26.607 kb on + strand, within HP15_p42g31at 26.607 kb on + strand, within HP15_p42g31at 26.661 kb on - strand, within HP15_p42g31at 26.662 kb on - strand, within HP15_p42g31at 26.663 kb on + strand, within HP15_p42g31at 26.690 kb on + strand, within HP15_p42g31at 26.698 kb on - strand, within HP15_p42g31at 26.767 kb on - strand, within HP15_p42g31at 26.783 kb on + strand, within HP15_p42g31at 26.791 kb on + strandat 26.791 kb on - strandat 26.994 kb on + strand, within HP15_p42g32at 27.014 kb on + strand, within HP15_p42g32at 27.027 kb on - strand, within HP15_p42g32at 27.133 kb on + strandat 27.179 kb on - strand, within HP15_p42g33at 27.179 kb on - strand, within HP15_p42g33at 27.181 kb on - strand, within HP15_p42g33at 27.192 kb on - strand, within HP15_p42g33at 27.252 kb on + strand, within HP15_p42g33at 27.252 kb on + strand, within HP15_p42g33at 27.260 kb on - strand, within HP15_p42g33at 27.260 kb on - strand, within HP15_p42g33at 27.320 kb on - strand, within HP15_p42g33at 27.330 kb on + strand, within HP15_p42g33at 27.343 kb on - strand, within HP15_p42g33at 27.415 kb on + strand, within HP15_p42g33at 27.457 kb on + strand, within HP15_p42g33at 27.513 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.546 kb on + strand, within HP15_p42g33at 27.554 kb on - strand, within HP15_p42g33at 27.651 kb on + strand, within HP15_p42g33at 27.659 kb on - strand, within HP15_p42g33at 27.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml
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25,520 + HP15_p42g29 0.76 -0.8
25,528 - HP15_p42g29 0.80 +0.4
25,530 + HP15_p42g29 0.81 -0.1
25,530 + HP15_p42g29 0.81 -1.0
25,530 + HP15_p42g29 0.81 -0.1
25,530 + HP15_p42g29 0.81 -0.4
25,530 + HP15_p42g29 0.81 -0.3
25,535 + HP15_p42g29 0.84 +0.0
25,535 + HP15_p42g29 0.84 -0.1
25,538 - HP15_p42g29 0.86 -2.2
25,538 - HP15_p42g29 0.86 +0.5
25,538 - HP15_p42g29 0.86 -1.4
25,579 + -0.3
25,605 - -0.1
25,617 + -0.7
25,617 + -0.1
25,630 + +0.3
25,633 + -0.5
25,637 - -0.1
25,674 - -0.4
25,696 - HP15_p42g30 0.12 +0.4
25,696 - HP15_p42g30 0.12 -0.2
25,701 - HP15_p42g30 0.13 -0.4
25,752 - HP15_p42g30 0.19 +0.3
25,768 + HP15_p42g30 0.20 +0.9
25,768 + HP15_p42g30 0.20 +0.2
25,882 - HP15_p42g30 0.34 +0.1
25,908 + HP15_p42g30 0.37 +0.4
25,933 - HP15_p42g30 0.40 +0.5
25,947 - HP15_p42g30 0.41 -0.1
25,985 + HP15_p42g30 0.46 +1.4
26,005 + HP15_p42g30 0.48 +0.8
26,006 - HP15_p42g30 0.48 +1.2
26,006 - HP15_p42g30 0.48 -0.7
26,013 - HP15_p42g30 0.49 -0.4
26,074 + HP15_p42g30 0.56 -0.1
26,137 + HP15_p42g30 0.63 -0.9
26,150 - HP15_p42g30 0.65 -1.5
26,162 - HP15_p42g30 0.66 -0.4
26,183 + HP15_p42g30 0.69 +1.0
26,242 + HP15_p42g30 0.75 +0.1
26,250 - HP15_p42g30 0.76 +0.1
26,290 + HP15_p42g30 0.81 +0.8
26,290 + HP15_p42g30 0.81 -0.2
26,303 + HP15_p42g30 0.83 -0.2
26,337 + HP15_p42g30 0.87 +0.0
26,343 + HP15_p42g30 0.87 -0.6
26,409 + +0.1
26,462 - -0.7
26,485 + +0.1
26,485 + -0.7
26,485 + +0.3
26,485 + +0.4
26,485 + -2.3
26,493 - +0.6
26,493 - +0.7
26,493 - -0.3
26,605 + HP15_p42g31 0.39 -0.5
26,607 + HP15_p42g31 0.40 -2.6
26,607 + HP15_p42g31 0.40 +0.1
26,661 - HP15_p42g31 0.55 -0.6
26,662 - HP15_p42g31 0.55 +0.4
26,663 + HP15_p42g31 0.56 +0.0
26,690 + HP15_p42g31 0.63 -0.0
26,698 - HP15_p42g31 0.66 +0.9
26,767 - HP15_p42g31 0.85 +0.3
26,783 + HP15_p42g31 0.90 +0.1
26,791 + -0.3
26,791 - -1.8
26,994 + HP15_p42g32 0.23 -0.2
27,014 + HP15_p42g32 0.38 -0.3
27,027 - HP15_p42g32 0.48 +0.4
27,133 + -1.2
27,179 - HP15_p42g33 0.14 -1.0
27,179 - HP15_p42g33 0.14 -2.0
27,181 - HP15_p42g33 0.14 -0.7
27,192 - HP15_p42g33 0.16 -1.5
27,252 + HP15_p42g33 0.25 -2.2
27,252 + HP15_p42g33 0.25 -1.6
27,260 - HP15_p42g33 0.26 -1.5
27,260 - HP15_p42g33 0.26 -0.4
27,320 - HP15_p42g33 0.36 -1.6
27,330 + HP15_p42g33 0.37 -2.7
27,343 - HP15_p42g33 0.39 -0.6
27,415 + HP15_p42g33 0.51 -1.6
27,457 + HP15_p42g33 0.57 -0.9
27,513 + HP15_p42g33 0.66 -2.0
27,546 + HP15_p42g33 0.71 -1.7
27,546 + HP15_p42g33 0.71 -2.0
27,546 + HP15_p42g33 0.71 -1.2
27,546 + HP15_p42g33 0.71 -2.9
27,554 - HP15_p42g33 0.73 -1.4
27,651 + HP15_p42g33 0.88 -2.3
27,659 - HP15_p42g33 0.89 -1.0
27,745 + -0.4

Or see this region's nucleotide sequence