Experiment: m.b. Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4047 and HP15_4048 are separated by 40 nucleotides HP15_4048 and HP15_4049 are separated by 21 nucleotides HP15_4049 and HP15_4050 are separated by 182 nucleotides
HP15_4047: HP15_4047 - metallo-beta-lactamase family protein, at 4,280,217 to 4,281,599
_4047
HP15_4048: HP15_4048 - extracellular solute-binding protein, family 3, at 4,281,640 to 4,282,404
_4048
HP15_4049: HP15_4049 - HD-GYP domain protein, at 4,282,426 to 4,283,808
_4049
HP15_4050: HP15_4050 - sensory box/GGDEF family protein, at 4,283,991 to 4,286,258
_4050
Position (kb)
4282
4283
4284 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4281.455 kb on + strand, within HP15_4047 at 4281.468 kb on + strand at 4281.476 kb on - strand at 4281.486 kb on - strand at 4281.621 kb on - strand at 4281.677 kb on - strand at 4281.689 kb on + strand at 4281.727 kb on + strand, within HP15_4048 at 4281.732 kb on + strand, within HP15_4048 at 4281.740 kb on - strand, within HP15_4048 at 4282.272 kb on + strand, within HP15_4048 at 4282.272 kb on + strand, within HP15_4048 at 4282.277 kb on + strand, within HP15_4048 at 4282.295 kb on + strand, within HP15_4048 at 4282.381 kb on + strand at 4282.382 kb on - strand at 4282.382 kb on - strand at 4282.382 kb on - strand at 4282.382 kb on - strand at 4282.454 kb on - strand at 4282.564 kb on + strand at 4282.576 kb on + strand, within HP15_4049 at 4282.709 kb on + strand, within HP15_4049 at 4282.712 kb on - strand, within HP15_4049 at 4282.760 kb on + strand, within HP15_4049 at 4282.979 kb on + strand, within HP15_4049 at 4283.006 kb on + strand, within HP15_4049 at 4283.165 kb on + strand, within HP15_4049 at 4283.275 kb on + strand, within HP15_4049 at 4283.283 kb on - strand, within HP15_4049 at 4283.307 kb on - strand, within HP15_4049 at 4283.410 kb on - strand, within HP15_4049 at 4283.532 kb on + strand, within HP15_4049 at 4283.568 kb on + strand, within HP15_4049 at 4283.575 kb on + strand, within HP15_4049 at 4283.603 kb on + strand, within HP15_4049 at 4283.664 kb on - strand, within HP15_4049 at 4283.783 kb on + strand at 4283.890 kb on + strand at 4283.903 kb on - strand at 4283.936 kb on + strand at 4283.960 kb on + strand at 4283.976 kb on - strand at 4283.983 kb on - strand at 4283.988 kb on + strand at 4284.048 kb on - strand at 4284.056 kb on + strand at 4284.121 kb on + strand at 4284.153 kb on - strand at 4284.207 kb on + strand at 4284.207 kb on + strand at 4284.207 kb on + strand at 4284.215 kb on - strand at 4284.230 kb on - strand, within HP15_4050 at 4284.274 kb on + strand, within HP15_4050 at 4284.327 kb on - strand, within HP15_4050 at 4284.393 kb on + strand, within HP15_4050 at 4284.393 kb on + strand, within HP15_4050 at 4284.393 kb on + strand, within HP15_4050 at 4284.496 kb on + strand, within HP15_4050 at 4284.521 kb on - strand, within HP15_4050 at 4284.523 kb on + strand, within HP15_4050 at 4284.547 kb on + strand, within HP15_4050 at 4284.598 kb on - strand, within HP15_4050 at 4284.603 kb on - strand, within HP15_4050 at 4284.604 kb on - strand, within HP15_4050 at 4284.677 kb on + strand, within HP15_4050 at 4284.677 kb on + strand, within HP15_4050 at 4284.677 kb on - strand, within HP15_4050 at 4284.685 kb on - strand, within HP15_4050 at 4284.685 kb on - strand, within HP15_4050 at 4284.707 kb on + strand, within HP15_4050 at 4284.761 kb on + strand, within HP15_4050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml remove 4,281,455 + HP15_4047 0.90 -0.6 4,281,468 + +1.3 4,281,476 - -0.4 4,281,486 - -3.1 4,281,621 - +0.3 4,281,677 - -0.5 4,281,689 + -0.5 4,281,727 + HP15_4048 0.11 -1.7 4,281,732 + HP15_4048 0.12 +0.2 4,281,740 - HP15_4048 0.13 +0.0 4,282,272 + HP15_4048 0.83 +0.4 4,282,272 + HP15_4048 0.83 +1.1 4,282,277 + HP15_4048 0.83 +0.3 4,282,295 + HP15_4048 0.86 +0.5 4,282,381 + +0.9 4,282,382 - -0.3 4,282,382 - -0.6 4,282,382 - +0.8 4,282,382 - +0.4 4,282,454 - -0.3 4,282,564 + -0.3 4,282,576 + HP15_4049 0.11 +0.4 4,282,709 + HP15_4049 0.20 +0.3 4,282,712 - HP15_4049 0.21 -0.1 4,282,760 + HP15_4049 0.24 +0.1 4,282,979 + HP15_4049 0.40 +0.1 4,283,006 + HP15_4049 0.42 +0.3 4,283,165 + HP15_4049 0.53 -0.6 4,283,275 + HP15_4049 0.61 -0.3 4,283,283 - HP15_4049 0.62 -0.1 4,283,307 - HP15_4049 0.64 +2.4 4,283,410 - HP15_4049 0.71 +0.4 4,283,532 + HP15_4049 0.80 -3.3 4,283,568 + HP15_4049 0.83 -0.8 4,283,575 + HP15_4049 0.83 -0.8 4,283,603 + HP15_4049 0.85 +2.7 4,283,664 - HP15_4049 0.90 -0.2 4,283,783 + -0.9 4,283,890 + +0.3 4,283,903 - -0.3 4,283,936 + -0.5 4,283,960 + -1.8 4,283,976 - +0.9 4,283,983 - -0.4 4,283,988 + +1.7 4,284,048 - +1.0 4,284,056 + -0.6 4,284,121 + +0.5 4,284,153 - -1.8 4,284,207 + -0.6 4,284,207 + +0.4 4,284,207 + -0.4 4,284,215 - +0.2 4,284,230 - HP15_4050 0.11 +0.3 4,284,274 + HP15_4050 0.12 +0.2 4,284,327 - HP15_4050 0.15 -0.6 4,284,393 + HP15_4050 0.18 +0.4 4,284,393 + HP15_4050 0.18 -0.5 4,284,393 + HP15_4050 0.18 -0.0 4,284,496 + HP15_4050 0.22 -0.6 4,284,521 - HP15_4050 0.23 -0.0 4,284,523 + HP15_4050 0.23 -0.5 4,284,547 + HP15_4050 0.25 -0.4 4,284,598 - HP15_4050 0.27 -0.6 4,284,603 - HP15_4050 0.27 -2.4 4,284,604 - HP15_4050 0.27 +0.7 4,284,677 + HP15_4050 0.30 +0.3 4,284,677 + HP15_4050 0.30 +0.3 4,284,677 - HP15_4050 0.30 -0.3 4,284,685 - HP15_4050 0.31 -0.6 4,284,685 - HP15_4050 0.31 -0.3 4,284,707 + HP15_4050 0.32 +0.1 4,284,761 + HP15_4050 0.34 +0.2
Or see this region's nucleotide sequence