Experiment: m.b. Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3999 and HP15_4000 are separated by 10 nucleotides HP15_4000 and HP15_4001 are separated by 119 nucleotides HP15_4001 and HP15_4002 are separated by 153 nucleotides
HP15_3999: HP15_3999 - AcrB/AcrD/AcrF family protein, at 4,229,700 to 4,232,930
_3999
HP15_4000: HP15_4000 - GGDEF domain membrane protein, at 4,232,941 to 4,233,996
_4000
HP15_4001: HP15_4001 - ion transport 2 domain protein, at 4,234,116 to 4,234,565
_4001
HP15_4002: HP15_4002 - efflux transporter, RND family, MFP subunit, at 4,234,719 to 4,235,957
_4002
Position (kb)
4232
4233
4234 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4231.945 kb on + strand, within HP15_3999 at 4231.965 kb on - strand, within HP15_3999 at 4231.974 kb on + strand, within HP15_3999 at 4231.983 kb on + strand at 4231.996 kb on + strand, within HP15_3999 at 4232.002 kb on + strand, within HP15_3999 at 4232.016 kb on - strand, within HP15_3999 at 4232.054 kb on - strand, within HP15_3999 at 4232.063 kb on + strand, within HP15_3999 at 4232.108 kb on - strand, within HP15_3999 at 4232.387 kb on - strand, within HP15_3999 at 4232.410 kb on - strand, within HP15_3999 at 4232.416 kb on - strand, within HP15_3999 at 4232.516 kb on - strand, within HP15_3999 at 4232.643 kb on + strand at 4232.695 kb on + strand at 4232.738 kb on - strand at 4232.750 kb on + strand at 4232.753 kb on - strand at 4232.784 kb on + strand at 4233.024 kb on - strand at 4233.048 kb on + strand, within HP15_4000 at 4233.058 kb on + strand, within HP15_4000 at 4233.067 kb on + strand, within HP15_4000 at 4233.075 kb on - strand, within HP15_4000 at 4233.289 kb on + strand, within HP15_4000 at 4233.322 kb on - strand, within HP15_4000 at 4233.322 kb on - strand, within HP15_4000 at 4233.527 kb on + strand, within HP15_4000 at 4233.562 kb on - strand, within HP15_4000 at 4233.666 kb on - strand, within HP15_4000 at 4233.716 kb on + strand, within HP15_4000 at 4233.934 kb on + strand at 4234.017 kb on - strand at 4234.287 kb on + strand, within HP15_4001 at 4234.287 kb on + strand, within HP15_4001 at 4234.297 kb on - strand, within HP15_4001 at 4234.368 kb on + strand, within HP15_4001 at 4234.574 kb on - strand at 4234.622 kb on + strand at 4234.630 kb on - strand at 4234.666 kb on - strand at 4234.811 kb on - strand at 4234.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml remove 4,231,945 + HP15_3999 0.69 -0.1 4,231,965 - HP15_3999 0.70 -0.4 4,231,974 + HP15_3999 0.70 +0.9 4,231,983 + +2.1 4,231,996 + HP15_3999 0.71 +0.4 4,232,002 + HP15_3999 0.71 -0.2 4,232,016 - HP15_3999 0.72 +0.7 4,232,054 - HP15_3999 0.73 -2.0 4,232,063 + HP15_3999 0.73 +2.7 4,232,108 - HP15_3999 0.75 +1.1 4,232,387 - HP15_3999 0.83 -1.0 4,232,410 - HP15_3999 0.84 -0.8 4,232,416 - HP15_3999 0.84 +1.6 4,232,516 - HP15_3999 0.87 +0.0 4,232,643 + +0.8 4,232,695 + +1.1 4,232,738 - -0.4 4,232,750 + +1.3 4,232,753 - -0.1 4,232,784 + +0.6 4,233,024 - -0.3 4,233,048 + HP15_4000 0.10 +0.8 4,233,058 + HP15_4000 0.11 +1.6 4,233,067 + HP15_4000 0.12 +1.3 4,233,075 - HP15_4000 0.13 -0.4 4,233,289 + HP15_4000 0.33 +1.7 4,233,322 - HP15_4000 0.36 +0.0 4,233,322 - HP15_4000 0.36 -0.8 4,233,527 + HP15_4000 0.55 +1.8 4,233,562 - HP15_4000 0.59 +1.8 4,233,666 - HP15_4000 0.69 -0.1 4,233,716 + HP15_4000 0.73 +1.1 4,233,934 + +1.3 4,234,017 - -0.1 4,234,287 + HP15_4001 0.38 +0.9 4,234,287 + HP15_4001 0.38 +0.5 4,234,297 - HP15_4001 0.40 -1.9 4,234,368 + HP15_4001 0.56 +2.3 4,234,574 - -0.0 4,234,622 + +0.5 4,234,630 - +3.1 4,234,666 - +3.0 4,234,811 - +0.0 4,234,834 - -0.9
Or see this region's nucleotide sequence