Strain Fitness in Marinobacter adhaerens HP15 around HP15_2775

Experiment: m.b. Bacitracin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2773 and HP15_2774 are separated by 20 nucleotidesHP15_2774 and HP15_2775 are separated by 57 nucleotidesHP15_2775 and HP15_2776 are separated by 82 nucleotides HP15_2773: HP15_2773 - conserved hypothetical protein, membrane, at 2,926,325 to 2,926,780 _2773 HP15_2774: HP15_2774 - DSBA oxidoreductase, at 2,926,801 to 2,927,448 _2774 HP15_2775: HP15_2775 - transcriptional regulator protein, LysR family, at 2,927,506 to 2,928,399 _2775 HP15_2776: HP15_2776 - membrane protein containing DUF6, transmembrane, at 2,928,482 to 2,929,384 _2776 Position (kb) 2927 2928 2929Strain fitness (log2 ratio) -2 -1 0 1at 2926.621 kb on + strand, within HP15_2773at 2926.724 kb on + strand, within HP15_2773at 2926.802 kb on + strandat 2926.872 kb on + strand, within HP15_2774at 2926.913 kb on - strand, within HP15_2774at 2926.988 kb on - strand, within HP15_2774at 2927.015 kb on + strand, within HP15_2774at 2927.028 kb on - strand, within HP15_2774at 2927.107 kb on - strand, within HP15_2774at 2927.107 kb on - strand, within HP15_2774at 2927.109 kb on + strand, within HP15_2774at 2927.241 kb on - strand, within HP15_2774at 2927.281 kb on + strand, within HP15_2774at 2927.301 kb on + strand, within HP15_2774at 2927.313 kb on + strand, within HP15_2774at 2927.363 kb on + strand, within HP15_2774at 2927.488 kb on + strandat 2927.546 kb on - strandat 2927.556 kb on - strandat 2927.654 kb on - strand, within HP15_2775at 2927.735 kb on - strand, within HP15_2775at 2927.735 kb on - strand, within HP15_2775at 2927.786 kb on + strand, within HP15_2775at 2927.804 kb on - strand, within HP15_2775at 2927.833 kb on - strand, within HP15_2775at 2927.938 kb on + strand, within HP15_2775at 2927.960 kb on + strand, within HP15_2775at 2927.984 kb on - strand, within HP15_2775at 2928.001 kb on - strand, within HP15_2775at 2928.105 kb on + strand, within HP15_2775at 2928.208 kb on + strand, within HP15_2775at 2928.222 kb on - strand, within HP15_2775at 2928.231 kb on - strand, within HP15_2775at 2928.234 kb on - strand, within HP15_2775at 2928.270 kb on + strand, within HP15_2775at 2928.437 kb on - strandat 2928.487 kb on - strandat 2928.508 kb on - strandat 2928.567 kb on + strandat 2928.567 kb on + strandat 2928.631 kb on - strand, within HP15_2776at 2928.636 kb on - strand, within HP15_2776at 2928.679 kb on + strand, within HP15_2776at 2928.759 kb on + strand, within HP15_2776at 2928.759 kb on + strand, within HP15_2776at 2928.813 kb on + strand, within HP15_2776at 2928.813 kb on + strand, within HP15_2776at 2928.816 kb on + strand, within HP15_2776at 2928.820 kb on - strand, within HP15_2776at 2928.820 kb on - strand, within HP15_2776at 2928.831 kb on + strand, within HP15_2776at 2928.999 kb on - strand, within HP15_2776at 2929.058 kb on - strand, within HP15_2776at 2929.127 kb on - strand, within HP15_2776at 2929.152 kb on + strand, within HP15_2776at 2929.232 kb on - strand, within HP15_2776

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml
remove
2,926,621 + HP15_2773 0.65 -0.3
2,926,724 + HP15_2773 0.88 +0.4
2,926,802 + -0.2
2,926,872 + HP15_2774 0.11 +0.5
2,926,913 - HP15_2774 0.17 -0.4
2,926,988 - HP15_2774 0.29 -0.2
2,927,015 + HP15_2774 0.33 +0.4
2,927,028 - HP15_2774 0.35 -0.8
2,927,107 - HP15_2774 0.47 -0.4
2,927,107 - HP15_2774 0.47 -0.4
2,927,109 + HP15_2774 0.48 -0.4
2,927,241 - HP15_2774 0.68 -1.4
2,927,281 + HP15_2774 0.74 +0.4
2,927,301 + HP15_2774 0.77 +0.8
2,927,313 + HP15_2774 0.79 +0.7
2,927,363 + HP15_2774 0.87 -0.4
2,927,488 + +0.6
2,927,546 - +0.7
2,927,556 - -0.1
2,927,654 - HP15_2775 0.17 -0.4
2,927,735 - HP15_2775 0.26 +1.2
2,927,735 - HP15_2775 0.26 -1.7
2,927,786 + HP15_2775 0.31 +0.9
2,927,804 - HP15_2775 0.33 -0.1
2,927,833 - HP15_2775 0.37 -0.4
2,927,938 + HP15_2775 0.48 -0.1
2,927,960 + HP15_2775 0.51 -0.4
2,927,984 - HP15_2775 0.53 -0.7
2,928,001 - HP15_2775 0.55 +0.9
2,928,105 + HP15_2775 0.67 +0.1
2,928,208 + HP15_2775 0.79 -0.8
2,928,222 - HP15_2775 0.80 -0.4
2,928,231 - HP15_2775 0.81 -1.4
2,928,234 - HP15_2775 0.81 -1.1
2,928,270 + HP15_2775 0.85 -0.0
2,928,437 - +0.3
2,928,487 - +0.6
2,928,508 - +0.0
2,928,567 + -2.3
2,928,567 + +0.2
2,928,631 - HP15_2776 0.17 +0.6
2,928,636 - HP15_2776 0.17 -0.2
2,928,679 + HP15_2776 0.22 +0.2
2,928,759 + HP15_2776 0.31 -0.7
2,928,759 + HP15_2776 0.31 -0.5
2,928,813 + HP15_2776 0.37 -0.6
2,928,813 + HP15_2776 0.37 +0.6
2,928,816 + HP15_2776 0.37 -2.1
2,928,820 - HP15_2776 0.37 +0.1
2,928,820 - HP15_2776 0.37 -0.2
2,928,831 + HP15_2776 0.39 +0.3
2,928,999 - HP15_2776 0.57 +0.5
2,929,058 - HP15_2776 0.64 -0.4
2,929,127 - HP15_2776 0.71 -0.6
2,929,152 + HP15_2776 0.74 -0.9
2,929,232 - HP15_2776 0.83 -0.2

Or see this region's nucleotide sequence