Experiment: m.b. Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_236 and HP15_237 are separated by 74 nucleotides HP15_237 and HP15_238 overlap by 4 nucleotides
HP15_236: HP15_236 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 221,444 to 222,232
_236
HP15_237: HP15_237 - HemY domain protein, at 222,307 to 223,548
_237
HP15_238: HP15_238 - protein of unknown function, HemX, at 223,545 to 224,669
_238
Position (kb) 222
223
224 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 221.320 kb on + strand at 221.332 kb on - strand at 221.539 kb on + strand, within HP15_236 at 221.570 kb on - strand, within HP15_236 at 221.582 kb on + strand, within HP15_236 at 221.614 kb on + strand, within HP15_236 at 221.624 kb on + strand, within HP15_236 at 221.677 kb on + strand, within HP15_236 at 221.801 kb on + strand, within HP15_236 at 221.872 kb on + strand, within HP15_236 at 221.929 kb on + strand, within HP15_236 at 221.937 kb on - strand, within HP15_236 at 221.937 kb on - strand, within HP15_236 at 221.937 kb on - strand, within HP15_236 at 222.043 kb on + strand, within HP15_236 at 222.048 kb on + strand, within HP15_236 at 222.056 kb on - strand, within HP15_236 at 222.092 kb on + strand, within HP15_236 at 222.150 kb on + strand, within HP15_236 at 222.170 kb on + strand at 222.241 kb on + strand at 222.319 kb on - strand at 222.338 kb on + strand at 222.420 kb on - strand at 222.640 kb on - strand, within HP15_237 at 222.651 kb on - strand, within HP15_237 at 222.665 kb on + strand, within HP15_237 at 222.715 kb on - strand, within HP15_237 at 222.777 kb on + strand, within HP15_237 at 222.843 kb on + strand, within HP15_237 at 222.848 kb on + strand, within HP15_237 at 222.920 kb on + strand, within HP15_237 at 223.035 kb on + strand, within HP15_237 at 223.071 kb on + strand, within HP15_237 at 223.103 kb on - strand, within HP15_237 at 223.108 kb on + strand, within HP15_237 at 223.108 kb on + strand, within HP15_237 at 223.108 kb on + strand, within HP15_237 at 223.189 kb on + strand, within HP15_237 at 223.281 kb on - strand, within HP15_237 at 223.426 kb on - strand at 223.464 kb on - strand at 223.472 kb on + strand at 223.497 kb on + strand at 223.500 kb on - strand at 223.640 kb on - strand at 223.700 kb on + strand, within HP15_238 at 223.710 kb on - strand, within HP15_238 at 223.893 kb on - strand, within HP15_238 at 223.898 kb on + strand, within HP15_238 at 223.908 kb on + strand, within HP15_238 at 223.939 kb on - strand, within HP15_238 at 223.939 kb on - strand, within HP15_238 at 223.953 kb on + strand, within HP15_238 at 224.038 kb on - strand, within HP15_238 at 224.040 kb on + strand, within HP15_238 at 224.048 kb on - strand, within HP15_238 at 224.054 kb on - strand, within HP15_238 at 224.523 kb on - strand, within HP15_238
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml remove 221,320 + +0.8 221,332 - +0.0 221,539 + HP15_236 0.12 -0.5 221,570 - HP15_236 0.16 -0.9 221,582 + HP15_236 0.17 -0.5 221,614 + HP15_236 0.22 -0.6 221,624 + HP15_236 0.23 -1.1 221,677 + HP15_236 0.30 -0.1 221,801 + HP15_236 0.45 -0.8 221,872 + HP15_236 0.54 +0.4 221,929 + HP15_236 0.61 -0.7 221,937 - HP15_236 0.62 -0.5 221,937 - HP15_236 0.62 -0.5 221,937 - HP15_236 0.62 +0.2 222,043 + HP15_236 0.76 +0.4 222,048 + HP15_236 0.77 -2.2 222,056 - HP15_236 0.78 -1.0 222,092 + HP15_236 0.82 -0.5 222,150 + HP15_236 0.89 -0.8 222,170 + -0.6 222,241 + -0.7 222,319 - +1.5 222,338 + -1.8 222,420 - -3.2 222,640 - HP15_237 0.27 -0.2 222,651 - HP15_237 0.28 -0.6 222,665 + HP15_237 0.29 -2.6 222,715 - HP15_237 0.33 -2.6 222,777 + HP15_237 0.38 -3.8 222,843 + HP15_237 0.43 -2.0 222,848 + HP15_237 0.44 -2.5 222,920 + HP15_237 0.49 -1.5 223,035 + HP15_237 0.59 -2.9 223,071 + HP15_237 0.62 -1.3 223,103 - HP15_237 0.64 -0.1 223,108 + HP15_237 0.64 -3.1 223,108 + HP15_237 0.64 -2.9 223,108 + HP15_237 0.64 -2.5 223,189 + HP15_237 0.71 -4.1 223,281 - HP15_237 0.78 -2.2 223,426 - -3.2 223,464 - -1.8 223,472 + -2.5 223,497 + -2.5 223,500 - -1.8 223,640 - -1.3 223,700 + HP15_238 0.14 -3.2 223,710 - HP15_238 0.15 -2.5 223,893 - HP15_238 0.31 +0.6 223,898 + HP15_238 0.31 -1.9 223,908 + HP15_238 0.32 -3.5 223,939 - HP15_238 0.35 -1.8 223,939 - HP15_238 0.35 -1.9 223,953 + HP15_238 0.36 -3.0 224,038 - HP15_238 0.44 -2.1 224,040 + HP15_238 0.44 -2.9 224,048 - HP15_238 0.45 -1.5 224,054 - HP15_238 0.45 +0.4 224,523 - HP15_238 0.87 -1.9
Or see this region's nucleotide sequence