Strain Fitness in Marinobacter adhaerens HP15 around HP15_228

Experiment: m.b. Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_226 and HP15_228 are separated by 6 nucleotidesHP15_228 and HP15_227 overlap by 2 nucleotidesHP15_227 and HP15_229 are separated by 256 nucleotidesHP15_229 and HP15_230 are separated by 64 nucleotides HP15_226: HP15_226 - ABC transporter ATP-binding protein-like protein, at 211,174 to 213,117 _226 HP15_228: HP15_228 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 213,124 to 214,566 _228 HP15_227: HP15_227 - hypothetical protein, at 214,565 to 214,669 _227 HP15_229: HP15_229 - thioredoxin, at 214,926 to 215,270 _229 HP15_230: HP15_230 - molybdenum cofactor biosynthesis protein E, at 215,335 to 215,781 _230 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.162 kb on + strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.170 kb on - strand, within HP15_226at 212.202 kb on + strand, within HP15_226at 212.216 kb on - strand, within HP15_226at 212.224 kb on - strand, within HP15_226at 212.225 kb on + strand, within HP15_226at 212.228 kb on - strand, within HP15_226at 212.244 kb on + strand, within HP15_226at 212.282 kb on + strand, within HP15_226at 212.359 kb on - strand, within HP15_226at 212.387 kb on + strand, within HP15_226at 212.511 kb on + strand, within HP15_226at 212.516 kb on + strand, within HP15_226at 212.516 kb on + strand, within HP15_226at 212.516 kb on + strand, within HP15_226at 212.590 kb on + strand, within HP15_226at 212.669 kb on - strand, within HP15_226at 212.694 kb on + strand, within HP15_226at 212.760 kb on + strand, within HP15_226at 212.760 kb on + strand, within HP15_226at 212.761 kb on + strand, within HP15_226at 212.768 kb on - strand, within HP15_226at 212.788 kb on - strand, within HP15_226at 212.802 kb on - strand, within HP15_226at 212.822 kb on - strand, within HP15_226at 212.966 kb on + strandat 212.989 kb on + strandat 213.019 kb on + strandat 213.059 kb on - strandat 213.073 kb on - strandat 213.120 kb on + strandat 213.159 kb on - strandat 213.172 kb on - strandat 213.191 kb on + strandat 213.232 kb on + strandat 213.271 kb on + strand, within HP15_228at 213.297 kb on + strand, within HP15_228at 213.343 kb on - strand, within HP15_228at 213.364 kb on + strand, within HP15_228at 213.462 kb on - strand, within HP15_228at 213.467 kb on - strand, within HP15_228at 213.542 kb on + strand, within HP15_228at 213.550 kb on - strand, within HP15_228at 213.555 kb on - strand, within HP15_228at 213.555 kb on - strand, within HP15_228at 213.555 kb on - strand, within HP15_228at 213.582 kb on - strand, within HP15_228at 213.672 kb on + strand, within HP15_228at 213.858 kb on - strand, within HP15_228at 213.872 kb on + strand, within HP15_228at 213.921 kb on + strand, within HP15_228at 213.924 kb on + strand, within HP15_228at 213.929 kb on - strand, within HP15_228at 214.034 kb on + strand, within HP15_228at 214.060 kb on + strand, within HP15_228at 214.242 kb on + strand, within HP15_228at 214.254 kb on + strand, within HP15_228at 214.289 kb on + strand, within HP15_228at 214.332 kb on - strand, within HP15_228at 214.406 kb on + strand, within HP15_228at 214.414 kb on - strand, within HP15_228at 214.414 kb on - strand, within HP15_228at 214.446 kb on - strandat 214.651 kb on - strand, within HP15_227at 214.743 kb on + strandat 214.767 kb on - strandat 214.778 kb on + strandat 214.802 kb on + strandat 214.871 kb on - strandat 215.032 kb on - strand, within HP15_229at 215.397 kb on - strand, within HP15_230at 215.441 kb on - strand, within HP15_230at 215.482 kb on - strand, within HP15_230at 215.486 kb on + strand, within HP15_230at 215.500 kb on + strand, within HP15_230at 215.523 kb on + strand, within HP15_230at 215.531 kb on - strand, within HP15_230at 215.531 kb on - strand, within HP15_230at 215.531 kb on - strand, within HP15_230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml
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212,162 + HP15_226 0.51 +0.7
212,162 + HP15_226 0.51 +0.0
212,162 + HP15_226 0.51 +0.3
212,162 + HP15_226 0.51 -0.1
212,162 + HP15_226 0.51 +0.3
212,170 - HP15_226 0.51 +0.2
212,170 - HP15_226 0.51 +0.4
212,170 - HP15_226 0.51 -0.2
212,170 - HP15_226 0.51 +0.1
212,202 + HP15_226 0.53 +1.3
212,216 - HP15_226 0.54 +0.5
212,224 - HP15_226 0.54 -0.0
212,225 + HP15_226 0.54 -0.2
212,228 - HP15_226 0.54 -0.4
212,244 + HP15_226 0.55 +1.3
212,282 + HP15_226 0.57 +0.3
212,359 - HP15_226 0.61 -0.4
212,387 + HP15_226 0.62 -0.7
212,511 + HP15_226 0.69 +0.9
212,516 + HP15_226 0.69 -0.3
212,516 + HP15_226 0.69 +0.6
212,516 + HP15_226 0.69 -0.1
212,590 + HP15_226 0.73 +2.0
212,669 - HP15_226 0.77 +0.3
212,694 + HP15_226 0.78 +2.0
212,760 + HP15_226 0.82 +1.2
212,760 + HP15_226 0.82 +0.6
212,761 + HP15_226 0.82 +0.6
212,768 - HP15_226 0.82 -1.5
212,788 - HP15_226 0.83 +0.4
212,802 - HP15_226 0.84 -0.0
212,822 - HP15_226 0.85 -0.0
212,966 + +0.5
212,989 + +0.8
213,019 + +0.4
213,059 - +0.2
213,073 - -1.3
213,120 + -0.2
213,159 - +3.1
213,172 - +1.5
213,191 + +2.3
213,232 + +2.0
213,271 + HP15_228 0.10 +1.8
213,297 + HP15_228 0.12 +2.6
213,343 - HP15_228 0.15 +2.0
213,364 + HP15_228 0.17 +0.7
213,462 - HP15_228 0.23 +2.2
213,467 - HP15_228 0.24 +1.8
213,542 + HP15_228 0.29 +2.3
213,550 - HP15_228 0.30 +2.3
213,555 - HP15_228 0.30 +2.5
213,555 - HP15_228 0.30 +1.3
213,555 - HP15_228 0.30 +2.6
213,582 - HP15_228 0.32 +2.4
213,672 + HP15_228 0.38 +2.4
213,858 - HP15_228 0.51 +1.5
213,872 + HP15_228 0.52 +2.6
213,921 + HP15_228 0.55 +3.0
213,924 + HP15_228 0.55 +2.5
213,929 - HP15_228 0.56 +2.6
214,034 + HP15_228 0.63 +4.7
214,060 + HP15_228 0.65 +1.2
214,242 + HP15_228 0.77 +2.8
214,254 + HP15_228 0.78 +2.2
214,289 + HP15_228 0.81 +3.2
214,332 - HP15_228 0.84 +2.1
214,406 + HP15_228 0.89 +2.2
214,414 - HP15_228 0.89 +2.6
214,414 - HP15_228 0.89 +2.5
214,446 - +2.2
214,651 - HP15_227 0.82 +0.9
214,743 + +0.8
214,767 - -0.3
214,778 + +0.7
214,802 + +0.3
214,871 - -0.1
215,032 - HP15_229 0.31 +1.5
215,397 - HP15_230 0.14 -1.7
215,441 - HP15_230 0.24 +0.6
215,482 - HP15_230 0.33 -2.0
215,486 + HP15_230 0.34 +0.5
215,500 + HP15_230 0.37 +0.3
215,523 + HP15_230 0.42 +0.3
215,531 - HP15_230 0.44 +0.2
215,531 - HP15_230 0.44 +0.7
215,531 - HP15_230 0.44 +0.5

Or see this region's nucleotide sequence