Strain Fitness in Marinobacter adhaerens HP15 around HP15_2140

Experiment: m.b. Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2138 and HP15_2139 are separated by 15 nucleotidesHP15_2139 and HP15_2140 are separated by 46 nucleotidesHP15_2140 and HP15_2141 are separated by 34 nucleotides HP15_2138: HP15_2138 - conserved hypothetical protein, secreted, at 2,238,996 to 2,239,301 _2138 HP15_2139: HP15_2139 - tetratricopeptide TPR_2 repeat protein, at 2,239,317 to 2,239,826 _2139 HP15_2140: HP15_2140 - tetratricopeptide TPR_2 repeat protein, at 2,239,873 to 2,242,716 _2140 HP15_2141: HP15_2141 - protein containing tetratricopeptide repeats, at 2,242,751 to 2,244,625 _2141 Position (kb) 2239 2240 2241 2242 2243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2238.889 kb on - strandat 2238.891 kb on + strandat 2238.954 kb on - strandat 2238.956 kb on - strandat 2238.996 kb on + strandat 2239.001 kb on + strandat 2239.004 kb on - strandat 2239.006 kb on + strandat 2239.014 kb on - strandat 2239.435 kb on - strand, within HP15_2139at 2239.508 kb on + strand, within HP15_2139at 2239.582 kb on - strand, within HP15_2139at 2239.735 kb on - strand, within HP15_2139at 2239.761 kb on - strand, within HP15_2139at 2239.789 kb on + strandat 2239.795 kb on + strandat 2239.795 kb on + strandat 2239.877 kb on - strandat 2239.993 kb on - strandat 2240.039 kb on - strandat 2240.129 kb on - strandat 2240.314 kb on - strand, within HP15_2140at 2240.316 kb on + strand, within HP15_2140at 2240.324 kb on - strand, within HP15_2140at 2240.495 kb on - strand, within HP15_2140at 2240.749 kb on + strand, within HP15_2140at 2240.752 kb on - strand, within HP15_2140at 2240.953 kb on + strand, within HP15_2140at 2241.117 kb on + strand, within HP15_2140at 2241.163 kb on - strand, within HP15_2140at 2241.163 kb on - strand, within HP15_2140at 2241.163 kb on - strand, within HP15_2140at 2241.165 kb on - strand, within HP15_2140at 2241.165 kb on - strand, within HP15_2140at 2241.236 kb on - strand, within HP15_2140at 2241.360 kb on - strand, within HP15_2140at 2241.360 kb on - strand, within HP15_2140at 2241.360 kb on - strand, within HP15_2140at 2241.367 kb on + strand, within HP15_2140at 2241.451 kb on - strand, within HP15_2140at 2241.708 kb on + strand, within HP15_2140at 2241.708 kb on + strand, within HP15_2140at 2241.716 kb on - strand, within HP15_2140at 2241.815 kb on + strand, within HP15_2140at 2241.860 kb on - strand, within HP15_2140at 2241.941 kb on - strand, within HP15_2140at 2241.946 kb on - strand, within HP15_2140at 2242.069 kb on - strand, within HP15_2140at 2242.073 kb on + strand, within HP15_2140at 2242.261 kb on + strand, within HP15_2140at 2242.276 kb on - strand, within HP15_2140at 2242.276 kb on - strand, within HP15_2140at 2242.458 kb on + strandat 2242.466 kb on - strandat 2242.500 kb on - strandat 2242.524 kb on + strandat 2242.713 kb on - strandat 2242.720 kb on - strandat 2242.723 kb on + strandat 2242.915 kb on - strandat 2243.166 kb on - strand, within HP15_2141at 2243.372 kb on - strand, within HP15_2141at 2243.413 kb on + strand, within HP15_2141at 2243.423 kb on + strand, within HP15_2141at 2243.691 kb on + strand, within HP15_2141

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml
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2,238,889 - -0.8
2,238,891 + +0.2
2,238,954 - -0.4
2,238,956 - +0.4
2,238,996 + -0.0
2,239,001 + -0.2
2,239,004 - +0.5
2,239,006 + +0.3
2,239,014 - +0.7
2,239,435 - HP15_2139 0.23 -0.1
2,239,508 + HP15_2139 0.37 -0.5
2,239,582 - HP15_2139 0.52 -0.0
2,239,735 - HP15_2139 0.82 +0.7
2,239,761 - HP15_2139 0.87 -0.1
2,239,789 + +0.0
2,239,795 + -0.1
2,239,795 + -1.0
2,239,877 - -0.5
2,239,993 - -1.1
2,240,039 - -0.5
2,240,129 - +0.1
2,240,314 - HP15_2140 0.16 -0.7
2,240,316 + HP15_2140 0.16 -0.5
2,240,324 - HP15_2140 0.16 +0.1
2,240,495 - HP15_2140 0.22 +0.6
2,240,749 + HP15_2140 0.31 -0.5
2,240,752 - HP15_2140 0.31 -0.8
2,240,953 + HP15_2140 0.38 +0.3
2,241,117 + HP15_2140 0.44 -1.5
2,241,163 - HP15_2140 0.45 -0.1
2,241,163 - HP15_2140 0.45 +0.2
2,241,163 - HP15_2140 0.45 -0.7
2,241,165 - HP15_2140 0.45 -0.0
2,241,165 - HP15_2140 0.45 +1.5
2,241,236 - HP15_2140 0.48 -0.5
2,241,360 - HP15_2140 0.52 -0.1
2,241,360 - HP15_2140 0.52 -0.8
2,241,360 - HP15_2140 0.52 +0.0
2,241,367 + HP15_2140 0.53 +0.2
2,241,451 - HP15_2140 0.55 -0.3
2,241,708 + HP15_2140 0.65 +0.6
2,241,708 + HP15_2140 0.65 -0.8
2,241,716 - HP15_2140 0.65 -0.8
2,241,815 + HP15_2140 0.68 -0.9
2,241,860 - HP15_2140 0.70 +2.2
2,241,941 - HP15_2140 0.73 -0.2
2,241,946 - HP15_2140 0.73 -0.3
2,242,069 - HP15_2140 0.77 +0.3
2,242,073 + HP15_2140 0.77 -0.6
2,242,261 + HP15_2140 0.84 -0.7
2,242,276 - HP15_2140 0.84 -0.8
2,242,276 - HP15_2140 0.84 -1.2
2,242,458 + -0.5
2,242,466 - +0.3
2,242,500 - -0.4
2,242,524 + -0.3
2,242,713 - -0.7
2,242,720 - -0.2
2,242,723 + +0.6
2,242,915 - +1.1
2,243,166 - HP15_2141 0.22 +0.3
2,243,372 - HP15_2141 0.33 -1.7
2,243,413 + HP15_2141 0.35 -3.0
2,243,423 + HP15_2141 0.36 -0.6
2,243,691 + HP15_2141 0.50 -0.4

Or see this region's nucleotide sequence