Strain Fitness in Dechlorosoma suillum PS around Dsui_3501

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3500 and Dsui_3501 overlap by 52 nucleotidesDsui_3501 and Dsui_3502 are separated by 18 nucleotides Dsui_3500: Dsui_3500 - N-acetylmuramoyl-L-alanine amidase, at 3,766,238 to 3,767,605 _3500 Dsui_3501: Dsui_3501 - ATPase, YjeE family, at 3,767,554 to 3,768,081 _3501 Dsui_3502: Dsui_3502 - iron-sulfur cluster binding protein, putative, at 3,768,100 to 3,769,218 _3502 Position (kb) 3767 3768 3769Strain fitness (log2 ratio) -1 0 1 2 3at 3768.172 kb on - strandat 3768.190 kb on + strandat 3768.251 kb on - strand, within Dsui_3502at 3768.425 kb on - strand, within Dsui_3502at 3768.428 kb on + strand, within Dsui_3502at 3768.458 kb on + strandat 3768.481 kb on - strandat 3768.563 kb on + strand, within Dsui_3502at 3768.639 kb on - strand, within Dsui_3502at 3768.642 kb on + strand, within Dsui_3502at 3768.800 kb on + strand, within Dsui_3502at 3768.902 kb on - strand, within Dsui_3502at 3769.075 kb on + strand, within Dsui_3502

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,768,172 - -1.2
3,768,190 + +0.5
3,768,251 - Dsui_3502 0.13 +2.0
3,768,425 - Dsui_3502 0.29 +0.8
3,768,428 + Dsui_3502 0.29 -1.2
3,768,458 + +1.8
3,768,481 - +2.8
3,768,563 + Dsui_3502 0.41 +0.0
3,768,639 - Dsui_3502 0.48 +0.7
3,768,642 + Dsui_3502 0.48 -0.3
3,768,800 + Dsui_3502 0.63 -1.5
3,768,902 - Dsui_3502 0.72 +0.6
3,769,075 + Dsui_3502 0.87 +0.2

Or see this region's nucleotide sequence