Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3439 and Dsui_3440 are separated by 127 nucleotides Dsui_3440 and Dsui_3441 overlap by 4 nucleotides
Dsui_3439: Dsui_3439 - methyl-accepting chemotaxis protein, at 3,694,316 to 3,695,965
_3439
Dsui_3440: Dsui_3440 - Protein of unknown function (DUF2892), at 3,696,093 to 3,696,302
_3440
Dsui_3441: Dsui_3441 - cation/multidrug efflux pump, at 3,696,299 to 3,699,550
_3441
Position (kb)
3696
3697 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3695.094 kb on - strand, within Dsui_3439 at 3695.119 kb on + strand at 3695.160 kb on - strand, within Dsui_3439 at 3695.221 kb on + strand, within Dsui_3439 at 3695.233 kb on + strand, within Dsui_3439 at 3695.325 kb on - strand, within Dsui_3439 at 3695.611 kb on + strand, within Dsui_3439 at 3695.660 kb on + strand, within Dsui_3439 at 3695.683 kb on - strand, within Dsui_3439 at 3695.684 kb on - strand, within Dsui_3439 at 3695.730 kb on + strand, within Dsui_3439 at 3695.820 kb on - strand at 3695.925 kb on + strand at 3696.036 kb on - strand at 3696.115 kb on + strand at 3696.167 kb on - strand, within Dsui_3440 at 3696.255 kb on - strand, within Dsui_3440 at 3696.298 kb on - strand at 3696.313 kb on + strand at 3696.529 kb on - strand at 3696.559 kb on + strand at 3696.612 kb on - strand at 3696.679 kb on + strand at 3696.716 kb on - strand, within Dsui_3441 at 3696.751 kb on - strand, within Dsui_3441 at 3696.839 kb on - strand, within Dsui_3441 at 3696.885 kb on + strand, within Dsui_3441 at 3696.988 kb on - strand at 3697.092 kb on - strand, within Dsui_3441
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 3,695,094 - Dsui_3439 0.47 -1.2 3,695,119 + +2.8 3,695,160 - Dsui_3439 0.51 +0.0 3,695,221 + Dsui_3439 0.55 -0.0 3,695,233 + Dsui_3439 0.56 +1.0 3,695,325 - Dsui_3439 0.61 +0.6 3,695,611 + Dsui_3439 0.78 -0.6 3,695,660 + Dsui_3439 0.81 +0.5 3,695,683 - Dsui_3439 0.83 +1.0 3,695,684 - Dsui_3439 0.83 -0.7 3,695,730 + Dsui_3439 0.86 -0.4 3,695,820 - -0.5 3,695,925 + +1.8 3,696,036 - +0.8 3,696,115 + +1.8 3,696,167 - Dsui_3440 0.35 -0.0 3,696,255 - Dsui_3440 0.77 -2.0 3,696,298 - -0.2 3,696,313 + +1.2 3,696,529 - +0.5 3,696,559 + +1.2 3,696,612 - +1.8 3,696,679 + +1.8 3,696,716 - Dsui_3441 0.13 +0.8 3,696,751 - Dsui_3441 0.14 -0.0 3,696,839 - Dsui_3441 0.17 +0.8 3,696,885 + Dsui_3441 0.18 +1.0 3,696,988 - +1.0 3,697,092 - Dsui_3441 0.24 +0.6
Or see this region's nucleotide sequence