Strain Fitness in Dechlorosoma suillum PS around Dsui_2869

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2868 and Dsui_2869 overlap by 17 nucleotidesDsui_2869 and Dsui_2870 are separated by 99 nucleotides Dsui_2868: Dsui_2868 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein, at 3,061,891 to 3,063,858 _2868 Dsui_2869: Dsui_2869 - transcriptional regulator, at 3,063,842 to 3,064,813 _2869 Dsui_2870: Dsui_2870 - putative permease, at 3,064,913 to 3,065,839 _2870 Position (kb) 3063 3064 3065Strain fitness (log2 ratio) -1 0 1 2 3 4at 3062.893 kb on + strandat 3062.956 kb on + strand, within Dsui_2868at 3063.078 kb on - strand, within Dsui_2868at 3063.130 kb on - strandat 3063.243 kb on + strand, within Dsui_2868at 3063.313 kb on + strandat 3063.545 kb on + strand, within Dsui_2868at 3063.569 kb on + strand, within Dsui_2868at 3063.668 kb on + strandat 3063.668 kb on + strandat 3063.736 kb on + strandat 3063.794 kb on + strandat 3063.794 kb on + strandat 3063.825 kb on + strandat 3063.833 kb on - strandat 3063.946 kb on - strand, within Dsui_2869at 3063.947 kb on - strand, within Dsui_2869at 3064.002 kb on + strand, within Dsui_2869at 3064.194 kb on - strand, within Dsui_2869at 3064.356 kb on + strand, within Dsui_2869at 3064.465 kb on + strand, within Dsui_2869at 3064.545 kb on - strand, within Dsui_2869at 3064.632 kb on - strand, within Dsui_2869at 3064.633 kb on + strandat 3064.881 kb on - strandat 3065.006 kb on + strand, within Dsui_2870at 3065.133 kb on + strand, within Dsui_2870at 3065.154 kb on + strand, within Dsui_2870at 3065.267 kb on + strand, within Dsui_2870at 3065.326 kb on + strand, within Dsui_2870at 3065.467 kb on + strand, within Dsui_2870at 3065.482 kb on + strand, within Dsui_2870at 3065.594 kb on + strand, within Dsui_2870at 3065.757 kb on + strandat 3065.805 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,062,893 + +0.2
3,062,956 + Dsui_2868 0.54 +0.6
3,063,078 - Dsui_2868 0.60 +0.5
3,063,130 - +0.5
3,063,243 + Dsui_2868 0.69 +2.2
3,063,313 + +3.4
3,063,545 + Dsui_2868 0.84 +0.2
3,063,569 + Dsui_2868 0.85 +0.6
3,063,668 + +0.5
3,063,668 + +2.0
3,063,736 + +2.8
3,063,794 + +1.2
3,063,794 + +0.2
3,063,825 + -0.0
3,063,833 - +0.2
3,063,946 - Dsui_2869 0.11 +1.8
3,063,947 - Dsui_2869 0.11 -0.0
3,064,002 + Dsui_2869 0.16 -0.1
3,064,194 - Dsui_2869 0.36 -0.4
3,064,356 + Dsui_2869 0.53 -0.9
3,064,465 + Dsui_2869 0.64 -0.4
3,064,545 - Dsui_2869 0.72 -0.2
3,064,632 - Dsui_2869 0.81 -0.5
3,064,633 + +0.8
3,064,881 - +2.8
3,065,006 + Dsui_2870 0.10 +0.8
3,065,133 + Dsui_2870 0.24 -0.7
3,065,154 + Dsui_2870 0.26 -0.9
3,065,267 + Dsui_2870 0.38 +1.8
3,065,326 + Dsui_2870 0.45 +1.8
3,065,467 + Dsui_2870 0.60 +0.2
3,065,482 + Dsui_2870 0.61 +2.8
3,065,594 + Dsui_2870 0.73 -0.0
3,065,757 + +3.8
3,065,805 + +1.2

Or see this region's nucleotide sequence