Strain Fitness in Dechlorosoma suillum PS around Dsui_2861

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2860 and Dsui_2861 are separated by 125 nucleotidesDsui_2861 and Dsui_2862 are separated by 130 nucleotides Dsui_2860: Dsui_2860 - single-stranded-DNA-specific exonuclease RecJ, at 3,049,991 to 3,051,688 _2860 Dsui_2861: Dsui_2861 - DMT(drug/metabolite transporter) superfamily permease, at 3,051,814 to 3,052,710 _2861 Dsui_2862: Dsui_2862 - peptide chain release factor 2, at 3,052,841 to 3,053,945 _2862 Position (kb) 3051 3052 3053Strain fitness (log2 ratio) -1 0 1at 3051.848 kb on + strandat 3051.919 kb on - strand, within Dsui_2861at 3052.074 kb on - strand, within Dsui_2861at 3052.156 kb on - strand, within Dsui_2861at 3052.180 kb on - strand, within Dsui_2861at 3052.254 kb on - strand, within Dsui_2861at 3052.379 kb on + strand, within Dsui_2861at 3052.384 kb on + strand, within Dsui_2861at 3052.392 kb on - strand, within Dsui_2861at 3052.600 kb on - strand, within Dsui_2861at 3052.639 kb on - strandat 3052.728 kb on - strandat 3052.801 kb on + strandat 3052.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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3,051,848 + +0.2
3,051,919 - Dsui_2861 0.12 -0.6
3,052,074 - Dsui_2861 0.29 -1.3
3,052,156 - Dsui_2861 0.38 -0.2
3,052,180 - Dsui_2861 0.41 +0.4
3,052,254 - Dsui_2861 0.49 -1.4
3,052,379 + Dsui_2861 0.63 +0.2
3,052,384 + Dsui_2861 0.64 +0.9
3,052,392 - Dsui_2861 0.64 -0.9
3,052,600 - Dsui_2861 0.88 -0.0
3,052,639 - +0.8
3,052,728 - -0.5
3,052,801 + +0.1
3,052,832 + -0.2

Or see this region's nucleotide sequence