Strain Fitness in Dechlorosoma suillum PS around Dsui_1052

Experiment: R2A with sodium pyruvate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1051 and Dsui_1052 are separated by 60 nucleotidesDsui_1052 and Dsui_1053 overlap by 4 nucleotidesDsui_1053 and Dsui_1054 are separated by 108 nucleotides Dsui_1051: Dsui_1051 - nitrogen regulation protein NR(I), at 1,084,183 to 1,085,619 _1051 Dsui_1052: Dsui_1052 - birA, biotin-(acetyl-CoA-carboxylase) ligase, at 1,085,680 to 1,086,555 _1052 Dsui_1053: Dsui_1053 - pantothenate kinase, type III, at 1,086,552 to 1,087,310 _1053 Dsui_1054: Dsui_1054 - pyridoxal-phosphate dependent TrpB-like enzyme, at 1,087,419 to 1,088,783 _1054 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -1 0 1 2 3at 1084.727 kb on + strand, within Dsui_1051at 1084.735 kb on - strand, within Dsui_1051at 1084.738 kb on + strand, within Dsui_1051at 1084.853 kb on + strand, within Dsui_1051at 1084.863 kb on + strand, within Dsui_1051at 1084.871 kb on - strand, within Dsui_1051at 1085.073 kb on + strand, within Dsui_1051at 1085.162 kb on + strand, within Dsui_1051at 1085.169 kb on - strand, within Dsui_1051at 1085.523 kb on + strandat 1085.575 kb on - strandat 1085.585 kb on - strandat 1085.593 kb on - strandat 1085.664 kb on + strandat 1085.671 kb on + strandat 1085.672 kb on - strandat 1085.674 kb on - strandat 1085.737 kb on - strandat 1085.748 kb on + strandat 1085.789 kb on - strandat 1086.557 kb on - strandat 1087.280 kb on - strandat 1087.388 kb on + strandat 1087.388 kb on + strandat 1087.388 kb on + strandat 1087.396 kb on - strandat 1087.429 kb on + strandat 1087.429 kb on + strandat 1087.429 kb on + strandat 1087.429 kb on + strandat 1087.463 kb on - strandat 1087.487 kb on + strandat 1087.495 kb on - strandat 1087.495 kb on - strandat 1087.547 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
remove
1,084,727 + Dsui_1051 0.38 -0.3
1,084,735 - Dsui_1051 0.38 +0.7
1,084,738 + Dsui_1051 0.39 -0.4
1,084,853 + Dsui_1051 0.47 +2.1
1,084,863 + Dsui_1051 0.47 +1.7
1,084,871 - Dsui_1051 0.48 +0.3
1,085,073 + Dsui_1051 0.62 +1.7
1,085,162 + Dsui_1051 0.68 +0.1
1,085,169 - Dsui_1051 0.69 -0.1
1,085,523 + +1.2
1,085,575 - +0.3
1,085,585 - -1.0
1,085,593 - +0.0
1,085,664 + +0.7
1,085,671 + -0.7
1,085,672 - -0.2
1,085,674 - -0.6
1,085,737 - +0.4
1,085,748 + -1.0
1,085,789 - +2.0
1,086,557 - +3.0
1,087,280 - +3.0
1,087,388 + -0.0
1,087,388 + +0.3
1,087,388 + +0.2
1,087,396 - -0.4
1,087,429 + +2.4
1,087,429 + +0.8
1,087,429 + -0.4
1,087,429 + -0.9
1,087,463 - +1.4
1,087,487 + +0.5
1,087,495 - -0.2
1,087,495 - +0.4
1,087,547 + -0.2

Or see this region's nucleotide sequence