Strain Fitness in Dechlorosoma suillum PS around Dsui_1051

Experiment: R2A with sodium pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1050 and Dsui_1051 are separated by 79 nucleotidesDsui_1051 and Dsui_1052 are separated by 60 nucleotidesDsui_1052 and Dsui_1053 overlap by 4 nucleotides Dsui_1050: Dsui_1050 - signal transduction histidine kinase, nitrogen specific, at 1,083,048 to 1,084,103 _1050 Dsui_1051: Dsui_1051 - nitrogen regulation protein NR(I), at 1,084,183 to 1,085,619 _1051 Dsui_1052: Dsui_1052 - birA, biotin-(acetyl-CoA-carboxylase) ligase, at 1,085,680 to 1,086,555 _1052 Dsui_1053: Dsui_1053 - pantothenate kinase, type III, at 1,086,552 to 1,087,310 _1053 Position (kb) 1084 1085 1086Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1083.193 kb on + strand, within Dsui_1050at 1083.234 kb on - strand, within Dsui_1050at 1083.245 kb on - strand, within Dsui_1050at 1083.249 kb on + strand, within Dsui_1050at 1083.249 kb on + strandat 1083.249 kb on + strand, within Dsui_1050at 1083.257 kb on - strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.266 kb on + strand, within Dsui_1050at 1083.274 kb on - strand, within Dsui_1050at 1083.395 kb on - strand, within Dsui_1050at 1083.406 kb on + strandat 1083.406 kb on + strand, within Dsui_1050at 1083.442 kb on + strand, within Dsui_1050at 1083.450 kb on - strand, within Dsui_1050at 1083.535 kb on + strand, within Dsui_1050at 1083.535 kb on + strand, within Dsui_1050at 1083.538 kb on - strand, within Dsui_1050at 1083.539 kb on - strand, within Dsui_1050at 1083.541 kb on + strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.543 kb on - strand, within Dsui_1050at 1083.555 kb on + strand, within Dsui_1050at 1083.579 kb on - strand, within Dsui_1050at 1083.657 kb on + strand, within Dsui_1050at 1083.666 kb on + strand, within Dsui_1050at 1083.723 kb on + strand, within Dsui_1050at 1083.775 kb on - strand, within Dsui_1050at 1083.775 kb on - strand, within Dsui_1050at 1083.787 kb on - strand, within Dsui_1050at 1083.806 kb on + strand, within Dsui_1050at 1083.822 kb on + strand, within Dsui_1050at 1083.927 kb on + strand, within Dsui_1050at 1084.012 kb on - strandat 1084.136 kb on + strandat 1084.138 kb on + strandat 1084.151 kb on - strandat 1084.183 kb on + strandat 1084.270 kb on + strandat 1084.363 kb on + strand, within Dsui_1051at 1084.371 kb on - strand, within Dsui_1051at 1084.371 kb on - strand, within Dsui_1051at 1084.372 kb on - strand, within Dsui_1051at 1084.397 kb on + strand, within Dsui_1051at 1084.411 kb on - strand, within Dsui_1051at 1084.443 kb on - strandat 1084.511 kb on + strand, within Dsui_1051at 1084.516 kb on + strand, within Dsui_1051at 1084.521 kb on + strand, within Dsui_1051at 1084.602 kb on + strand, within Dsui_1051at 1084.610 kb on - strandat 1084.727 kb on + strand, within Dsui_1051at 1084.735 kb on - strand, within Dsui_1051at 1084.738 kb on + strand, within Dsui_1051at 1084.853 kb on + strand, within Dsui_1051at 1084.863 kb on + strand, within Dsui_1051at 1084.871 kb on - strand, within Dsui_1051at 1085.073 kb on + strand, within Dsui_1051at 1085.162 kb on + strand, within Dsui_1051at 1085.169 kb on - strand, within Dsui_1051at 1085.523 kb on + strandat 1085.575 kb on - strandat 1085.585 kb on - strandat 1085.593 kb on - strandat 1085.664 kb on + strandat 1085.671 kb on + strandat 1085.672 kb on - strandat 1085.674 kb on - strandat 1085.737 kb on - strandat 1085.748 kb on + strandat 1085.789 kb on - strandat 1086.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium pyruvate
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1,083,193 + Dsui_1050 0.14 -1.1
1,083,234 - Dsui_1050 0.18 +0.9
1,083,245 - Dsui_1050 0.19 +0.9
1,083,249 + Dsui_1050 0.19 +0.2
1,083,249 + +2.7
1,083,249 + Dsui_1050 0.19 +0.4
1,083,257 - Dsui_1050 0.20 -0.1
1,083,266 + Dsui_1050 0.21 -0.2
1,083,266 + Dsui_1050 0.21 +0.4
1,083,274 - Dsui_1050 0.21 -0.5
1,083,395 - Dsui_1050 0.33 -0.7
1,083,406 + +2.4
1,083,406 + Dsui_1050 0.34 +0.4
1,083,442 + Dsui_1050 0.37 -0.3
1,083,450 - Dsui_1050 0.38 +0.0
1,083,535 + Dsui_1050 0.46 -0.7
1,083,535 + Dsui_1050 0.46 -0.4
1,083,538 - Dsui_1050 0.46 +0.6
1,083,539 - Dsui_1050 0.46 -0.7
1,083,541 + Dsui_1050 0.47 -2.0
1,083,543 - Dsui_1050 0.47 +0.6
1,083,543 - Dsui_1050 0.47 -0.2
1,083,543 - Dsui_1050 0.47 -0.1
1,083,555 + Dsui_1050 0.48 -1.4
1,083,579 - Dsui_1050 0.50 +1.1
1,083,657 + Dsui_1050 0.58 +0.7
1,083,666 + Dsui_1050 0.59 +0.2
1,083,723 + Dsui_1050 0.64 -0.6
1,083,775 - Dsui_1050 0.69 +0.0
1,083,775 - Dsui_1050 0.69 -1.3
1,083,787 - Dsui_1050 0.70 +0.6
1,083,806 + Dsui_1050 0.72 -0.1
1,083,822 + Dsui_1050 0.73 +0.2
1,083,927 + Dsui_1050 0.83 +0.3
1,084,012 - +0.4
1,084,136 + +0.6
1,084,138 + +1.3
1,084,151 - +0.0
1,084,183 + +0.7
1,084,270 + -0.3
1,084,363 + Dsui_1051 0.13 +0.1
1,084,371 - Dsui_1051 0.13 +0.0
1,084,371 - Dsui_1051 0.13 +0.3
1,084,372 - Dsui_1051 0.13 +0.8
1,084,397 + Dsui_1051 0.15 +0.7
1,084,411 - Dsui_1051 0.16 +2.7
1,084,443 - +1.6
1,084,511 + Dsui_1051 0.23 +2.0
1,084,516 + Dsui_1051 0.23 -0.3
1,084,521 + Dsui_1051 0.24 +0.5
1,084,602 + Dsui_1051 0.29 -0.8
1,084,610 - +1.0
1,084,727 + Dsui_1051 0.38 -0.3
1,084,735 - Dsui_1051 0.38 +0.7
1,084,738 + Dsui_1051 0.39 -0.4
1,084,853 + Dsui_1051 0.47 +2.1
1,084,863 + Dsui_1051 0.47 +1.7
1,084,871 - Dsui_1051 0.48 +0.3
1,085,073 + Dsui_1051 0.62 +1.7
1,085,162 + Dsui_1051 0.68 +0.1
1,085,169 - Dsui_1051 0.69 -0.1
1,085,523 + +1.2
1,085,575 - +0.3
1,085,585 - -1.0
1,085,593 - +0.0
1,085,664 + +0.7
1,085,671 + -0.7
1,085,672 - -0.2
1,085,674 - -0.6
1,085,737 - +0.4
1,085,748 + -1.0
1,085,789 - +2.0
1,086,557 - +3.0

Or see this region's nucleotide sequence