Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0615 and Dsui_0616 are separated by 14 nucleotides Dsui_0616 and Dsui_0617 are separated by 3 nucleotides Dsui_0617 and Dsui_0618 are separated by 10 nucleotides Dsui_0618 and Dsui_0619 are separated by 52 nucleotides
Dsui_0615: Dsui_0615 - ABC-type transport system, involved in lipoprotein release, permease component, at 609,864 to 611,000
_0615
Dsui_0616: Dsui_0616 - ABC-type antimicrobial peptide transport system, ATPase component, at 611,015 to 611,689
_0616
Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697
_0617
Dsui_0618: Dsui_0618 - putative lipoprotein involved in nitrous oxide reduction, at 612,708 to 613,274
_0618
Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690
_0619
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 610.858 kb on - strand, within Dsui_0615 at 611.088 kb on - strand at 611.206 kb on + strand, within Dsui_0616 at 611.206 kb on + strand, within Dsui_0616 at 611.214 kb on + strand, within Dsui_0616 at 611.315 kb on + strand, within Dsui_0616 at 611.508 kb on + strand, within Dsui_0616 at 611.618 kb on - strand, within Dsui_0616 at 612.047 kb on - strand, within Dsui_0617 at 612.422 kb on - strand, within Dsui_0617 at 612.578 kb on - strand at 612.603 kb on + strand at 612.675 kb on + strand at 612.746 kb on + strand at 612.810 kb on - strand, within Dsui_0618 at 612.904 kb on - strand, within Dsui_0618 at 612.916 kb on + strand, within Dsui_0618 at 612.954 kb on - strand, within Dsui_0618 at 613.094 kb on + strand, within Dsui_0618 at 613.161 kb on + strand, within Dsui_0618 at 613.259 kb on + strand at 613.259 kb on + strand at 613.259 kb on + strand at 613.277 kb on - strand at 613.290 kb on - strand at 613.401 kb on + strand at 613.401 kb on + strand at 613.569 kb on + strand at 613.569 kb on + strand, within Dsui_0619 at 613.575 kb on + strand, within Dsui_0619 at 613.577 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 610,858 - Dsui_0615 0.87 -0.1 611,088 - +0.2 611,206 + Dsui_0616 0.28 -0.2 611,206 + Dsui_0616 0.28 +0.6 611,214 + Dsui_0616 0.29 +0.8 611,315 + Dsui_0616 0.44 -0.7 611,508 + Dsui_0616 0.73 +1.1 611,618 - Dsui_0616 0.89 -0.7 612,047 - Dsui_0617 0.35 -1.5 612,422 - Dsui_0617 0.73 -0.9 612,578 - +0.7 612,603 + +1.8 612,675 + -0.6 612,746 + -0.8 612,810 - Dsui_0618 0.18 -0.7 612,904 - Dsui_0618 0.35 -0.3 612,916 + Dsui_0618 0.37 -0.2 612,954 - Dsui_0618 0.43 +0.4 613,094 + Dsui_0618 0.68 -0.3 613,161 + Dsui_0618 0.80 +0.3 613,259 + -0.1 613,259 + +1.3 613,259 + +3.0 613,277 - +2.0 613,290 - +2.0 613,401 + +0.3 613,401 + +0.2 613,569 + +2.0 613,569 + Dsui_0619 0.10 +0.5 613,575 + Dsui_0619 0.10 +0.4 613,577 - Dsui_0619 0.11 -1.8 613,631 - Dsui_0619 0.13 +0.1 613,631 - Dsui_0619 0.13 +1.7 613,631 - Dsui_0619 0.13 -0.0
Or see this region's nucleotide sequence