Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0430 and Dsui_0431 are separated by 12 nucleotides Dsui_0431 and Dsui_0432 are separated by 57 nucleotides Dsui_0432 and Dsui_0433 are separated by 93 nucleotides
Dsui_0430: Dsui_0430 - ABC-type branched-chain amino acid transport system, periplasmic component, at 436,104 to 437,216
_0430
Dsui_0431: Dsui_0431 - putative permease, DMT superfamily, at 437,229 to 438,065
_0431
Dsui_0432: Dsui_0432 - hypothetical protein, at 438,123 to 439,199
_0432
Dsui_0433: Dsui_0433 - collagenase-like protease, at 439,293 to 440,606
_0433
Position (kb) 438
439
440 Strain fitness (log2 ratio) -1
0
1
2
3 at 437.164 kb on - strand at 437.217 kb on + strand at 437.220 kb on - strand at 437.225 kb on - strand at 437.225 kb on - strand at 437.415 kb on - strand, within Dsui_0431 at 437.417 kb on - strand, within Dsui_0431 at 437.422 kb on - strand, within Dsui_0431 at 437.455 kb on + strand, within Dsui_0431 at 437.455 kb on + strand, within Dsui_0431 at 437.598 kb on - strand, within Dsui_0431 at 437.611 kb on + strand, within Dsui_0431 at 437.635 kb on - strand, within Dsui_0431 at 437.637 kb on + strand, within Dsui_0431 at 437.645 kb on - strand, within Dsui_0431 at 437.702 kb on + strand, within Dsui_0431 at 437.744 kb on + strand at 437.852 kb on - strand, within Dsui_0431 at 437.856 kb on - strand, within Dsui_0431 at 437.859 kb on + strand at 437.890 kb on - strand, within Dsui_0431 at 437.932 kb on - strand at 437.948 kb on + strand, within Dsui_0431 at 437.971 kb on - strand, within Dsui_0431 at 438.026 kb on - strand at 438.044 kb on - strand at 438.060 kb on + strand at 438.260 kb on - strand, within Dsui_0432 at 438.331 kb on + strand, within Dsui_0432 at 438.390 kb on + strand at 438.506 kb on - strand, within Dsui_0432 at 439.022 kb on + strand, within Dsui_0432 at 439.157 kb on + strand at 439.203 kb on - strand at 439.233 kb on + strand at 439.242 kb on + strand at 439.299 kb on - strand at 439.540 kb on - strand, within Dsui_0433 at 439.784 kb on - strand, within Dsui_0433 at 439.814 kb on + strand, within Dsui_0433 at 439.950 kb on - strand at 439.996 kb on - strand, within Dsui_0433 at 440.076 kb on - strand, within Dsui_0433 at 440.134 kb on - strand, within Dsui_0433
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 437,164 - +1.0 437,217 + +0.5 437,220 - -0.0 437,225 - +0.6 437,225 - +3.0 437,415 - Dsui_0431 0.22 -0.4 437,417 - Dsui_0431 0.22 +0.0 437,422 - Dsui_0431 0.23 -0.2 437,455 + Dsui_0431 0.27 -0.7 437,455 + Dsui_0431 0.27 +0.4 437,598 - Dsui_0431 0.44 -1.5 437,611 + Dsui_0431 0.46 +1.0 437,635 - Dsui_0431 0.49 -0.7 437,637 + Dsui_0431 0.49 -0.8 437,645 - Dsui_0431 0.50 -0.2 437,702 + Dsui_0431 0.57 -1.0 437,744 + +0.4 437,852 - Dsui_0431 0.74 -0.4 437,856 - Dsui_0431 0.75 -0.2 437,859 + +2.0 437,890 - Dsui_0431 0.79 -1.1 437,932 - +2.0 437,948 + Dsui_0431 0.86 +1.4 437,971 - Dsui_0431 0.89 +0.2 438,026 - +0.2 438,044 - -0.2 438,060 + -0.2 438,260 - Dsui_0432 0.13 +0.6 438,331 + Dsui_0432 0.19 +2.0 438,390 + +1.4 438,506 - Dsui_0432 0.36 +1.0 439,022 + Dsui_0432 0.83 +0.2 439,157 + -0.0 439,203 - +2.4 439,233 + -0.0 439,242 + +2.0 439,299 - +0.1 439,540 - Dsui_0433 0.19 +0.9 439,784 - Dsui_0433 0.37 +0.5 439,814 + Dsui_0433 0.40 +0.4 439,950 - +1.4 439,996 - Dsui_0433 0.54 +1.1 440,076 - Dsui_0433 0.60 -0.4 440,134 - Dsui_0433 0.64 +1.2
Or see this region's nucleotide sequence