Experiment: R2A with sodium pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0042 and Dsui_0043 are separated by 135 nucleotides Dsui_0043 and Dsui_0044 are separated by 25 nucleotides Dsui_0044 and Dsui_0045 are separated by 6 nucleotides Dsui_0045 and Dsui_0046 are separated by 34 nucleotides
Dsui_0042: Dsui_0042 - Protein of unknown function (DUF2892), at 39,210 to 39,401
_0042
Dsui_0043: Dsui_0043 - cAMP-binding protein, at 39,537 to 40,205
_0043
Dsui_0044: Dsui_0044 - exodeoxyribonuclease III, at 40,231 to 41,004
_0044
Dsui_0045: Dsui_0045 - glutaredoxin-like protein, at 41,011 to 41,520
_0045
Dsui_0046: Dsui_0046 - Zn-dependent oligopeptidase, at 41,555 to 43,636
_0046
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1
2
3 at 39.249 kb on + strand at 39.321 kb on + strand, within Dsui_0042 at 39.352 kb on - strand, within Dsui_0042 at 39.438 kb on - strand at 39.463 kb on - strand at 39.628 kb on + strand at 39.639 kb on - strand, within Dsui_0043 at 39.666 kb on + strand at 39.712 kb on - strand, within Dsui_0043 at 39.914 kb on + strand, within Dsui_0043 at 39.933 kb on + strand, within Dsui_0043 at 39.933 kb on + strand, within Dsui_0043 at 39.941 kb on - strand, within Dsui_0043 at 39.982 kb on + strand at 39.990 kb on - strand, within Dsui_0043 at 40.025 kb on + strand at 40.044 kb on - strand, within Dsui_0043 at 40.093 kb on - strand, within Dsui_0043 at 40.120 kb on + strand, within Dsui_0043 at 40.207 kb on - strand at 40.222 kb on + strand at 40.259 kb on + strand at 40.368 kb on + strand, within Dsui_0044 at 40.376 kb on - strand, within Dsui_0044 at 40.458 kb on + strand at 40.674 kb on + strand, within Dsui_0044 at 40.783 kb on + strand, within Dsui_0044 at 40.873 kb on - strand, within Dsui_0044 at 41.000 kb on - strand at 41.027 kb on + strand at 41.094 kb on - strand, within Dsui_0045 at 41.215 kb on + strand, within Dsui_0045 at 41.274 kb on + strand at 41.279 kb on + strand at 41.324 kb on + strand, within Dsui_0045 at 41.332 kb on - strand, within Dsui_0045 at 41.403 kb on - strand, within Dsui_0045 at 41.459 kb on + strand, within Dsui_0045 at 41.467 kb on - strand, within Dsui_0045 at 41.485 kb on - strand at 41.506 kb on - strand at 41.658 kb on + strand at 41.793 kb on + strand, within Dsui_0046 at 41.825 kb on + strand, within Dsui_0046 at 41.899 kb on - strand, within Dsui_0046 at 41.947 kb on - strand, within Dsui_0046
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium pyruvate remove 39,249 + +0.7 39,321 + Dsui_0042 0.58 +1.4 39,352 - Dsui_0042 0.74 +0.1 39,438 - -0.8 39,463 - +0.8 39,628 + +1.0 39,639 - Dsui_0043 0.15 -1.1 39,666 + +1.4 39,712 - Dsui_0043 0.26 +0.2 39,914 + Dsui_0043 0.56 -0.5 39,933 + Dsui_0043 0.59 -0.2 39,933 + Dsui_0043 0.59 +0.2 39,941 - Dsui_0043 0.60 -0.1 39,982 + +1.7 39,990 - Dsui_0043 0.68 +1.0 40,025 + +3.0 40,044 - Dsui_0043 0.76 -1.5 40,093 - Dsui_0043 0.83 -0.6 40,120 + Dsui_0043 0.87 +1.4 40,207 - +0.2 40,222 + +0.4 40,259 + +1.2 40,368 + Dsui_0044 0.18 -0.0 40,376 - Dsui_0044 0.19 -0.9 40,458 + +0.4 40,674 + Dsui_0044 0.57 -0.5 40,783 + Dsui_0044 0.71 -1.0 40,873 - Dsui_0044 0.83 +0.1 41,000 - +0.4 41,027 + -0.2 41,094 - Dsui_0045 0.16 -0.6 41,215 + Dsui_0045 0.40 +0.2 41,274 + +1.4 41,279 + +1.4 41,324 + Dsui_0045 0.61 -0.0 41,332 - Dsui_0045 0.63 -0.0 41,403 - Dsui_0045 0.77 +1.0 41,459 + Dsui_0045 0.88 -0.1 41,467 - Dsui_0045 0.89 +0.2 41,485 - -0.4 41,506 - +0.4 41,658 + +1.3 41,793 + Dsui_0046 0.11 +0.4 41,825 + Dsui_0046 0.13 +0.8 41,899 - Dsui_0046 0.17 -1.4 41,947 - Dsui_0046 0.19 +0.1
Or see this region's nucleotide sequence