Strain Fitness in Shewanella amazonensis SB2B around Sama_3518

Experiment: Thymidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Thymidine
4,151,176	+				-0.4
4,151,176	+				-0.4
4,151,177	-				+0.2
4,151,177	-				+1.1
4,151,177	-				-0.4
4,151,177	-				+0.4
4,151,204	+				-1.1
4,151,204	+				+0.5
4,151,205	-				-0.2
4,151,205	-				+0.2
4,151,218	+				+1.0
4,151,218	+				+0.1
4,151,218	+				-0.4
4,151,219	-				+0.2
4,151,223	+				+0.2
4,151,223	+				-1.4
4,151,223	+				+0.8
4,151,291	+				+0.5
4,151,298	+				-0.3
4,151,298	+				+0.6
4,151,317	-				-1.0
4,151,335	-				-0.4
4,151,376	+				-0.4
4,151,479	+				+0.7
4,151,479	+				-0.9
4,151,479	+				-0.2
4,151,479	+				+0.2
4,151,480	-				+0.4
4,151,480	-				-0.8
4,151,480	-				-2.7
4,151,480	-				-0.4
4,151,480	-				+0.2
4,151,541	-		Sama_3517	0.15	+0.5
4,151,559	+		Sama_3517	0.18	+0.5
4,151,568	-		Sama_3517	0.19	+0.4
4,151,585	+		Sama_3517	0.22	-1.2
4,151,632	+		Sama_3517	0.31	+0.1
4,151,632	+		Sama_3517	0.31	-0.8
4,151,633	-		Sama_3517	0.31	+0.1
4,151,664	+		Sama_3517	0.37	-1.0
4,151,664	+		Sama_3517	0.37	-0.4
4,151,664	+		Sama_3517	0.37	-0.1
4,151,665	-		Sama_3517	0.37	+0.7
4,151,670	+		Sama_3517	0.38	-0.5
4,151,670	+		Sama_3517	0.38	-0.3
4,151,670	+		Sama_3517	0.38	+0.7
4,151,670	+		Sama_3517	0.38	+0.3
4,151,670	+		Sama_3517	0.38	+0.0
4,151,671	-		Sama_3517	0.38	+0.0
4,151,671	-		Sama_3517	0.38	-0.3
4,151,749	+		Sama_3517	0.52	-0.2
4,151,750	-		Sama_3517	0.52	+0.1
4,151,750	-		Sama_3517	0.52	-0.3
4,151,816	+		Sama_3517	0.64	-0.8
4,151,816	+		Sama_3517	0.64	-0.7
4,151,816	+		Sama_3517	0.64	-1.8
4,151,816	+		Sama_3517	0.64	-0.6
4,151,816	+		Sama_3517	0.64	+0.8
4,151,817	-		Sama_3517	0.64	-0.1
4,151,817	-		Sama_3517	0.64	-1.1
4,151,817	-		Sama_3517	0.64	+0.5
4,151,823	+		Sama_3517	0.65	-0.8
4,151,824	-		Sama_3517	0.65	-0.9
4,151,824	-		Sama_3517	0.65	+1.1
4,151,824	-		Sama_3517	0.65	-1.2
4,151,860	+		Sama_3517	0.71	+1.4
4,151,860	+		Sama_3517	0.71	+2.8
4,151,861	-		Sama_3517	0.72	-0.4
4,151,861	-		Sama_3517	0.72	-1.0
4,151,861	-		Sama_3517	0.72	-0.4
4,151,861	-		Sama_3517	0.72	-2.0
4,151,861	-		Sama_3517	0.72	+0.5
4,151,861	-		Sama_3517	0.72	+0.8
4,151,932	+		Sama_3517	0.84	+1.2
4,151,942	-		Sama_3517	0.86	+0.4
4,151,963	+		Sama_3517	0.90	-0.8
4,151,963	+		Sama_3517	0.90	+0.8
4,151,963	+		Sama_3517	0.90	+0.7
4,151,964	-				+1.1
4,151,964	-				-1.5
4,151,964	-				+0.8
4,151,964	-				+0.8
4,151,969	+				-1.2
4,151,969	+				-0.4
4,151,969	+				+0.8
4,151,969	+				+0.2
4,151,970	-				+0.2
4,151,970	-				+0.2
4,151,970	-				-0.1
4,151,970	-				+0.0
4,151,970	-				+1.4
4,152,050	+				-2.6
4,152,050	+				-0.7
4,152,051	-				-0.4
4,152,051	-				-0.4
4,152,105	+				-0.6
4,152,153	+				+0.5
4,152,154	-				-1.7
4,152,154	-				-1.2
4,152,228	-		Sama_3518	0.10	-1.4
4,152,303	+		Sama_3518	0.19	-0.5
4,152,331	+		Sama_3518	0.22	+0.2
4,152,331	+		Sama_3518	0.22	-1.4
4,152,331	+		Sama_3518	0.22	-1.4
4,152,331	+		Sama_3518	0.22	-1.0
4,152,331	+		Sama_3518	0.22	-0.4
4,152,331	+		Sama_3518	0.22	+1.1
4,152,331	+		Sama_3518	0.22	-1.4
4,152,331	+		Sama_3518	0.22	+0.2
4,152,331	+		Sama_3518	0.22	-1.6
4,152,332	-		Sama_3518	0.22	-0.9
4,152,332	-		Sama_3518	0.22	-0.9
4,152,332	-		Sama_3518	0.22	-0.5
4,152,332	-		Sama_3518	0.22	-1.2
4,152,333	-		Sama_3518	0.22	-1.9
4,152,409	+		Sama_3518	0.31	-0.8
4,152,409	+		Sama_3518	0.31	-0.4
4,152,410	-		Sama_3518	0.31	-3.3
4,152,423	+		Sama_3518	0.32	-0.2
4,152,423	+		Sama_3518	0.32	-0.4
4,152,423	+		Sama_3518	0.32	-2.1
4,152,524	+		Sama_3518	0.44	-0.8
4,152,524	+		Sama_3518	0.44	-0.4
4,152,524	+		Sama_3518	0.44	+1.4
4,152,524	+		Sama_3518	0.44	-1.4
4,152,524	+		Sama_3518	0.44	-1.0
4,152,524	+		Sama_3518	0.44	-1.7
4,152,525	-		Sama_3518	0.44	-0.1
4,152,525	-		Sama_3518	0.44	-2.4
4,152,525	-		Sama_3518	0.44	-2.0
4,152,525	-		Sama_3518	0.44	-1.0
4,152,525	-		Sama_3518	0.44	-1.4
4,152,525	-		Sama_3518	0.44	-0.1
4,152,525	-		Sama_3518	0.44	+0.2
4,152,525	-		Sama_3518	0.44	-0.8
4,152,525	-		Sama_3518	0.44	-1.3
4,152,526	+		Sama_3518	0.44	+1.5
4,152,526	+		Sama_3518	0.44	-3.0
4,152,526	+		Sama_3518	0.44	-0.1
4,152,527	-		Sama_3518	0.44	-1.1
4,152,631	+		Sama_3518	0.56	+0.1
4,152,631	+		Sama_3518	0.56	-0.8
4,152,631	+		Sama_3518	0.56	-0.9
4,152,632	-		Sama_3518	0.56	-2.2
4,152,632	-		Sama_3518	0.56	-3.3
4,152,632	-		Sama_3518	0.56	-1.5
4,152,640	+		Sama_3518	0.57	-1.3
4,152,641	-		Sama_3518	0.57	-2.5
4,152,641	-		Sama_3518	0.57	-2.3
4,152,641	-		Sama_3518	0.57	-1.6
4,152,689	+		Sama_3518	0.62	-0.3
4,152,727	+		Sama_3518	0.67	+0.1
4,152,761	+		Sama_3518	0.71	-0.8
4,152,761	+		Sama_3518	0.71	-1.0
4,152,761	+		Sama_3518	0.71	-0.5
4,152,761	+		Sama_3518	0.71	-1.0
4,152,762	-		Sama_3518	0.71	-1.6
4,152,815	-		Sama_3518	0.77	-0.2
4,152,836	+		Sama_3518	0.79	-2.2
4,152,836	+		Sama_3518	0.79	-0.6
4,152,837	-		Sama_3518	0.79	-0.8
4,152,837	-		Sama_3518	0.79	-2.7
4,152,837	-		Sama_3518	0.79	+0.5
4,152,837	-		Sama_3518	0.79	-2.7
4,152,837	-		Sama_3518	0.79	-2.0
4,152,918	+		Sama_3518	0.89	-0.9
4,152,918	+		Sama_3518	0.89	-2.0
4,152,918	+		Sama_3518	0.89	-0.3
4,152,918	+		Sama_3518	0.89	-1.8
4,152,919	-		Sama_3518	0.89	-1.4
4,152,919	-		Sama_3518	0.89	-0.3
4,152,919	-		Sama_3518	0.89	-1.5
4,152,919	-		Sama_3518	0.89	-3.3
4,152,940	+				-1.4
4,152,940	+				-1.4
4,152,940	+				-1.3
4,152,958	+				-1.7
4,152,958	+				-0.5
4,152,958	+				-0.4
4,152,958	+				-0.4
4,152,959	-				-1.2
4,152,994	+				+0.2
4,152,994	+				+0.6
4,152,994	+				+0.8
4,152,994	+				-0.8
4,152,995	-				-0.4
4,152,995	-				-0.5
4,152,995	-				+0.4
4,152,995	-				-1.3
4,153,016	+				+1.1
4,153,016	+				+0.8
4,153,016	+				+0.6
4,153,017	-				-0.3
4,153,017	-				-0.5
4,153,017	-				-0.5
4,153,017	-				+0.7
4,153,017	-				+0.0
4,153,019	+				+0.0
4,153,019	+				-0.5
4,153,019	+				+0.1
4,153,019	+				-0.2
4,153,019	+				-0.9
4,153,019	+				-0.7
4,153,020	-				+0.4
4,153,020	-				-1.5
4,153,020	-				+0.3
4,153,020	-				+1.0
4,153,020	-				-0.0
4,153,020	-				+0.2
4,153,020	-				+0.5
4,153,020	-				+0.7
4,153,020	-				-0.1
4,153,020	-				-0.7
4,153,020	-				-0.1
4,153,020	-				+0.3
4,153,020	-				-0.8
4,153,021	+				+0.2
4,153,021	+				+0.8
4,153,021	+				-0.4
4,153,021	+				+0.1
4,153,021	+				+0.9
4,153,021	+				+0.2
4,153,021	+				+0.2
4,153,021	+				-0.2
4,153,021	+				-0.2
4,153,022	-				+1.1
4,153,022	-				+0.1
4,153,022	-				-1.7
4,153,022	-				-1.6
4,153,022	-				-1.1
4,153,022	-				-0.8
4,153,022	-				+0.4
4,153,022	-				-1.6
4,153,022	-				+0.5
4,153,022	-				-0.3
4,153,022	-				-0.5
4,153,022	-				+0.1
4,153,090	+				-1.2
4,153,090	+				-0.4
4,153,090	+				+1.0
4,153,090	+				+1.0
4,153,091	-				-1.2
4,153,091	-				-0.3
4,153,091	-				-1.4
4,153,140	+				+1.2
4,153,140	+				+0.7
4,153,141	-				-0.5
4,153,141	-				-0.4
4,153,141	-				+0.2
4,153,141	-				-0.3
4,153,158	+				-1.0
4,153,158	+				+0.4
4,153,158	+				-0.4
4,153,181	+				+0.3
4,153,181	+				+0.3
4,153,182	-				+0.4
4,153,182	-				-0.4
4,153,182	-				-0.5
4,153,182	-				-0.1
4,153,252	+				+1.8
4,153,252	+				-0.2
4,153,252	+				+0.2
4,153,253	-				+0.6
4,153,262	+				+0.2
4,153,262	+				-0.1
4,153,262	+				+2.2
4,153,263	-				-1.1
4,153,263	-				+0.2
4,153,287	+		Sama_3519	0.14	-0.1
4,153,312	+		Sama_3519	0.18	+0.6
4,153,312	+		Sama_3519	0.18	+0.1
4,153,320	+		Sama_3519	0.20	+0.8
4,153,320	+		Sama_3519	0.20	+0.8
4,153,321	-		Sama_3519	0.20	-0.3
4,153,321	-		Sama_3519	0.20	-0.2
4,153,321	-		Sama_3519	0.20	+2.5
4,153,321	-		Sama_3519	0.20	+0.8
4,153,321	-		Sama_3519	0.20	+0.8
4,153,321	-		Sama_3519	0.20	-1.6
4,153,322	+		Sama_3519	0.20	-0.5
4,153,322	+		Sama_3519	0.20	+0.5
4,153,323	-		Sama_3519	0.20	-1.9
4,153,377	+		Sama_3519	0.30	+0.2
4,153,417	+		Sama_3519	0.37	+0.0
4,153,417	+		Sama_3519	0.37	-0.9
4,153,417	+		Sama_3519	0.37	+1.2
4,153,418	-		Sama_3519	0.37	+0.1
4,153,418	-		Sama_3519	0.37	+0.3
4,153,498	+		Sama_3519	0.52	-0.3
4,153,499	-		Sama_3519	0.52	+1.3
4,153,499	-		Sama_3519	0.52	-0.1
4,153,568	+		Sama_3519	0.64	+0.3
4,153,568	+		Sama_3519	0.64	+0.3
4,153,569	-		Sama_3519	0.65	-0.1
4,153,569	-		Sama_3519	0.65	-1.0
4,153,572	+		Sama_3519	0.65	+1.3
4,153,572	+		Sama_3519	0.65	+0.5
4,153,572	+		Sama_3519	0.65	-0.2
4,153,572	+		Sama_3519	0.65	-0.2
4,153,572	+		Sama_3519	0.65	-0.1
4,153,572	+		Sama_3519	0.65	-0.4
4,153,573	-		Sama_3519	0.65	-0.5
4,153,573	-		Sama_3519	0.65	+0.3
4,153,573	-		Sama_3519	0.65	-0.1
4,153,573	-		Sama_3519	0.65	-0.3
4,153,670	+		Sama_3519	0.83	+0.1
4,153,671	-		Sama_3519	0.83	-0.1
4,153,702	+		Sama_3519	0.88	-1.4
4,153,702	+		Sama_3519	0.88	-0.2
4,153,702	+		Sama_3519	0.88	-0.2
4,153,703	-		Sama_3519	0.89	+1.2
4,153,703	-		Sama_3519	0.89	+1.8
4,153,751	+				-0.5
4,153,752	-				-1.0
4,153,823	+				+0.5
4,153,837	-				+1.4
4,153,837	-				+0.5
4,153,837	-				-1.2
4,153,881	-		Sama_3520	0.11	-0.5
4,153,881	-		Sama_3520	0.11	+1.2
4,154,007	+		Sama_3520	0.30	+0.8
4,154,008	-		Sama_3520	0.30	-0.5
4,154,008	-		Sama_3520	0.30	+1.6