Strain Fitness in Shewanella amazonensis SB2B around Sama_3388

Experiment: Thymidine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Thymidine
4,014,022	-		Sama_3386	0.65	+1.0
4,014,022	-		Sama_3386	0.65	-0.5
4,014,066	+		Sama_3386	0.75	-2.1
4,014,066	+		Sama_3386	0.75	+0.3
4,014,095	+		Sama_3386	0.82	+0.2
4,014,095	+		Sama_3386	0.82	+0.5
4,014,095	+		Sama_3386	0.82	+0.2
4,014,095	+		Sama_3386	0.82	-0.9
4,014,095	+		Sama_3386	0.82	+1.3
4,014,096	-		Sama_3386	0.82	+0.2
4,014,096	-		Sama_3386	0.82	-0.1
4,014,096	-		Sama_3386	0.82	+0.1
4,014,096	-		Sama_3386	0.82	-0.9
4,014,096	-		Sama_3386	0.82	-0.0
4,014,096	-		Sama_3386	0.82	+0.5
4,014,127	+		Sama_3386	0.89	-0.5
4,014,127	+		Sama_3386	0.89	-0.5
4,014,127	+		Sama_3386	0.89	-1.1
4,014,128	-		Sama_3386	0.89	+0.5
4,014,208	+				+1.6
4,014,208	+				-0.4
4,014,208	+				+1.2
4,014,209	-				+0.1
4,014,209	-				-1.3
4,014,209	-				-1.0
4,014,209	-				+2.5
4,014,213	+				-0.6
4,014,213	+				-0.3
4,014,213	+				+0.4
4,014,213	+				-1.1
4,014,213	+				-0.8
4,014,214	-				+0.2
4,014,214	-				+0.3
4,014,214	-				+0.0
4,014,214	-				-1.4
4,014,214	-				+0.3
4,014,214	-				+1.7
4,014,214	-				-0.3
4,014,214	-				+0.1
4,014,214	-				-0.5
4,014,214	-				-1.1
4,014,214	-				+0.1
4,014,214	-				-1.6
4,014,214	-				-0.7
4,014,215	+				+0.3
4,014,215	+				+0.3
4,014,215	+				-2.5
4,014,215	+				-1.3
4,014,215	+				-0.6
4,014,215	+				+1.2
4,014,215	+				+1.0
4,014,215	+				+0.4
4,014,215	+				+0.3
4,014,215	+				+0.4
4,014,215	+				-0.4
4,014,216	-				+1.4
4,014,216	-				-1.0
4,014,216	-				-0.3
4,014,216	-				-0.1
4,014,216	-				+1.1
4,014,216	-				+0.4
4,014,216	-				+0.3
4,014,216	-				+3.0
4,014,216	-				+0.7
4,014,216	-				-0.3
4,014,223	+				-0.3
4,014,223	+				+0.9
4,014,223	+				-0.6
4,014,223	+				-1.4
4,014,223	+				-1.1
4,014,223	+				+1.1
4,014,223	+				+0.7
4,014,223	+				-0.4
4,014,224	-				-1.4
4,014,224	-				+1.0
4,014,224	-				-0.3
4,014,224	-				+0.1
4,014,224	-				-0.6
4,014,224	-				+1.1
4,014,224	-				+0.1
4,014,227	+				+0.3
4,014,227	+				-0.2
4,014,227	+				-0.8
4,014,227	+				-0.3
4,014,227	+				-0.6
4,014,227	+				+0.1
4,014,227	+				+0.8
4,014,227	+				+0.5
4,014,227	+				+1.1
4,014,228	-				+1.1
4,014,228	-				-1.9
4,014,228	-				-2.4
4,014,228	-				+0.1
4,014,228	-				+1.2
4,014,228	-				+0.0
4,014,228	-				-0.3
4,014,260	-				+1.5
4,014,269	+				-0.4
4,014,269	+				+0.6
4,014,269	+				-0.5
4,014,269	+				-1.7
4,014,269	+				-0.6
4,014,269	+				+0.3
4,014,269	+				-0.1
4,014,269	+				+3.0
4,014,269	+				-0.2
4,014,269	+				+1.9
4,014,269	+				+0.5
4,014,269	+				-1.6
4,014,269	+				+0.0
4,014,269	+				-1.0
4,014,269	+				+1.1
4,014,269	+				+1.7
4,014,269	+				+0.4
4,014,269	+				-0.8
4,014,270	-				+1.7
4,014,270	-				+0.3
4,014,270	-				-0.6
4,014,270	-				-0.6
4,014,270	-				-0.6
4,014,308	-		Sama_3387	0.11	+0.4
4,014,320	+		Sama_3387	0.13	+1.0
4,014,320	+		Sama_3387	0.13	-1.1
4,014,424	+		Sama_3387	0.27	+0.9
4,014,424	+		Sama_3387	0.27	+0.2
4,014,511	+		Sama_3387	0.39	+0.7
4,014,521	-		Sama_3387	0.40	+2.1
4,014,599	+		Sama_3387	0.51	+1.3
4,014,599	+		Sama_3387	0.51	+0.7
4,014,600	-		Sama_3387	0.51	-0.5
4,014,600	-		Sama_3387	0.51	+0.7
4,014,604	+		Sama_3387	0.51	+1.7
4,014,641	+		Sama_3387	0.56	-0.0
4,014,642	-		Sama_3387	0.57	-1.1
4,014,728	+		Sama_3387	0.68	+0.2
4,014,730	+		Sama_3387	0.69	-1.3
4,014,830	+		Sama_3387	0.82	-0.3
4,014,830	+		Sama_3387	0.82	-0.0
4,014,830	+		Sama_3387	0.82	+0.6
4,014,849	-		Sama_3387	0.85	-0.4
4,014,849	-		Sama_3387	0.85	+0.4
4,014,958	-				+0.3
4,014,958	-				-0.3
4,014,963	-				-0.3
4,014,963	-				+0.7
4,014,963	-				-0.3
4,014,994	+				+0.4
4,014,994	+				+0.2
4,015,035	+				-0.6
4,015,035	+				-0.2
4,015,075	+				-0.6
4,015,075	+				+1.2
4,015,075	+				-0.1
4,015,075	+				+1.1
4,015,076	-				+0.7
4,015,076	-				-0.3
4,015,199	+				+0.4
4,015,199	+				-0.8
4,015,200	-				-0.6
4,015,328	+		Sama_3388	0.15	+0.7
4,015,337	+		Sama_3388	0.15	+0.7
4,015,407	+		Sama_3388	0.18	-1.4
4,015,407	+		Sama_3388	0.18	-1.9
4,015,407	+		Sama_3388	0.18	+1.0
4,015,407	+		Sama_3388	0.18	+1.0
4,015,407	+		Sama_3388	0.18	+1.7
4,015,408	-		Sama_3388	0.18	+1.9
4,015,408	-		Sama_3388	0.18	-0.0
4,015,408	-		Sama_3388	0.18	+0.4
4,015,408	-		Sama_3388	0.18	+0.2
4,015,408	-		Sama_3388	0.18	-1.1
4,015,437	-		Sama_3388	0.20	+1.3
4,015,468	+		Sama_3388	0.21	+0.7
4,015,468	+		Sama_3388	0.21	+0.8
4,015,468	+		Sama_3388	0.21	+0.4
4,015,468	+		Sama_3388	0.21	-1.7
4,015,468	+		Sama_3388	0.21	+1.2
4,015,469	-		Sama_3388	0.21	+0.1
4,015,488	+		Sama_3388	0.22	-0.6
4,015,488	+		Sama_3388	0.22	+1.5
4,015,488	+		Sama_3388	0.22	-1.0
4,015,489	-		Sama_3388	0.22	+0.7
4,015,489	-		Sama_3388	0.22	+1.0
4,015,489	-		Sama_3388	0.22	-0.4
4,015,615	-		Sama_3388	0.27	+0.1
4,015,615	-		Sama_3388	0.27	+1.3
4,015,674	+		Sama_3388	0.30	-0.0
4,015,675	-		Sama_3388	0.30	+3.0
4,015,675	-		Sama_3388	0.30	+0.6
4,015,675	-		Sama_3388	0.30	-1.4
4,015,758	+		Sama_3388	0.33	+1.0
4,015,758	+		Sama_3388	0.33	+0.6
4,015,759	-		Sama_3388	0.33	+0.9
4,015,794	+		Sama_3388	0.35	-0.3
4,015,795	-		Sama_3388	0.35	+0.0
4,015,795	-		Sama_3388	0.35	+1.3
4,015,795	-		Sama_3388	0.35	-0.4
4,015,864	+		Sama_3388	0.37	-0.2
4,015,864	+		Sama_3388	0.37	+0.2
4,015,864	+		Sama_3388	0.37	+0.7
4,015,864	+		Sama_3388	0.37	+1.7
4,015,865	-		Sama_3388	0.38	+0.1
4,015,865	-		Sama_3388	0.38	+0.6
4,015,865	-		Sama_3388	0.38	-1.3
4,015,865	-		Sama_3388	0.38	+0.1
4,015,908	+		Sama_3388	0.39	-0.0
4,015,908	+		Sama_3388	0.39	+0.1
4,015,908	+		Sama_3388	0.39	-0.3
4,015,908	+		Sama_3388	0.39	-1.0
4,015,909	-		Sama_3388	0.39	+2.7
4,015,909	-		Sama_3388	0.39	-0.1
4,015,909	-		Sama_3388	0.39	+0.1
4,015,909	-		Sama_3388	0.39	-0.4
4,015,909	-		Sama_3388	0.39	-0.6
4,015,961	+		Sama_3388	0.41	+0.4
4,015,961	+		Sama_3388	0.41	-0.0
4,015,962	-		Sama_3388	0.42	+0.7
4,016,056	+		Sama_3388	0.45	-0.9
4,016,056	+		Sama_3388	0.45	+1.1
4,016,057	-		Sama_3388	0.46	-0.7
4,016,150	+		Sama_3388	0.49	+0.9
4,016,150	+		Sama_3388	0.49	-2.1
4,016,150	+		Sama_3388	0.49	+0.1
4,016,162	+		Sama_3388	0.50	-0.4
4,016,162	+		Sama_3388	0.50	+0.5
4,016,163	-		Sama_3388	0.50	+1.1
4,016,163	-		Sama_3388	0.50	-0.9
4,016,172	-		Sama_3388	0.50	+0.8
4,016,172	-		Sama_3388	0.50	-1.1
4,016,389	+		Sama_3388	0.59	-1.6
4,016,389	+		Sama_3388	0.59	-2.2
4,016,390	-		Sama_3388	0.59	+0.1
4,016,390	-		Sama_3388	0.59	-0.7
4,016,390	-		Sama_3388	0.59	+0.0
4,016,390	-		Sama_3388	0.59	-0.5
4,016,390	-		Sama_3388	0.59	-0.3
4,016,422	+		Sama_3388	0.61	+0.1
4,016,423	-		Sama_3388	0.61	+0.1
4,016,549	+		Sama_3388	0.66	-0.3
4,016,549	+		Sama_3388	0.66	+0.2
4,016,549	+		Sama_3388	0.66	-0.3
4,016,550	-		Sama_3388	0.66	+0.4
4,016,584	+		Sama_3388	0.67	-0.5
4,016,603	+		Sama_3388	0.68	+0.4
4,016,603	+		Sama_3388	0.68	-0.6
4,016,604	-		Sama_3388	0.68	+0.8
4,016,604	-		Sama_3388	0.68	-0.9
4,016,604	-		Sama_3388	0.68	+0.0
4,016,604	-		Sama_3388	0.68	-0.3
4,016,604	-		Sama_3388	0.68	+0.1
4,016,604	-		Sama_3388	0.68	+0.1
4,016,604	-		Sama_3388	0.68	+0.2
4,016,625	+		Sama_3388	0.69	+0.7
4,016,625	+		Sama_3388	0.69	+0.9
4,016,625	+		Sama_3388	0.69	+0.0
4,016,678	+		Sama_3388	0.71	+0.4
4,016,678	+		Sama_3388	0.71	+1.0
4,016,678	+		Sama_3388	0.71	+0.3
4,016,857	+		Sama_3388	0.79	-0.4
4,016,857	+		Sama_3388	0.79	+0.8
4,016,858	-		Sama_3388	0.79	+1.5
4,016,886	+		Sama_3388	0.80	+0.2
4,016,886	+		Sama_3388	0.80	+0.0
4,016,887	-		Sama_3388	0.80	+1.9
4,016,899	+		Sama_3388	0.81	+0.1
4,016,933	+		Sama_3388	0.82	+0.0
4,016,974	+		Sama_3388	0.84	+3.0
4,016,974	+		Sama_3388	0.84	+1.0
4,016,974	+		Sama_3388	0.84	-1.6
4,016,975	-		Sama_3388	0.84	-0.2
4,016,975	-		Sama_3388	0.84	-0.7
4,017,099	+		Sama_3388	0.89	+1.4
4,017,100	-		Sama_3388	0.89	-1.0
4,017,100	-		Sama_3388	0.89	+0.5
4,017,127	-				-0.3
4,017,146	+				+1.4
4,017,147	-				-0.0
4,017,147	-				-0.3
4,017,147	-				-0.7
4,017,193	-				+1.0
4,017,196	+				-0.3
4,017,196	+				-0.0
4,017,196	+				-1.4
4,017,196	+				+1.2
4,017,196	+				-1.1
4,017,197	-				+0.1
4,017,197	-				+1.1
4,017,197	-				+0.3
4,017,259	+				-0.3
4,017,273	+				+0.3
4,017,274	-				-0.4
4,017,274	-				-0.5
4,017,274	-				+1.0
4,017,278	+				-1.9
4,017,278	+				+1.3
4,017,313	+				-0.9
4,017,362	+				-0.6
4,017,362	+				+0.0
4,017,362	+				+1.3
4,017,362	+				+0.2
4,017,363	-				+0.6
4,017,363	-				+0.3
4,017,363	-				+0.3
4,017,379	+				+1.3
4,017,379	+				+1.6
4,017,379	+				-0.3
4,017,380	-				-1.3
4,017,380	-				+1.5
4,017,380	-				-0.6
4,017,380	-				+3.3
4,017,415	+				-1.3
4,017,416	-				+1.7
4,017,416	-				+0.1
4,017,416	-				+0.5
4,017,417	+				-0.7
4,017,418	-				+0.6
4,017,418	-				+0.2
4,017,418	-				-1.3
4,017,418	-				-0.3
4,017,439	+				-1.9
4,017,439	+				+0.4
4,017,439	+				-0.1
4,017,440	-				+1.3
4,017,635	+		Sama_3389	0.21	+0.1
4,017,635	+		Sama_3389	0.21	+1.4
4,017,635	+		Sama_3389	0.21	-1.3
4,017,636	-		Sama_3389	0.21	-1.4
4,017,636	-		Sama_3389	0.21	-0.7
4,017,658	+		Sama_3389	0.23	-0.7
4,017,659	-		Sama_3389	0.23	+1.4
4,017,664	+		Sama_3389	0.23	+0.4
4,017,665	-		Sama_3389	0.24	-0.6
4,017,766	+		Sama_3389	0.31	-0.0
4,017,766	+		Sama_3389	0.31	+0.3
4,017,766	+		Sama_3389	0.31	+0.7
4,017,767	-		Sama_3389	0.32	+1.0
4,017,780	+		Sama_3389	0.33	+0.8
4,017,780	+		Sama_3389	0.33	+0.5
4,017,780	+		Sama_3389	0.33	-0.1
4,017,781	-		Sama_3389	0.33	+0.4
4,017,781	-		Sama_3389	0.33	-0.5
4,017,781	-		Sama_3389	0.33	+0.7
4,017,781	-		Sama_3389	0.33	-1.9
4,017,834	-		Sama_3389	0.37	-0.6
4,017,853	+		Sama_3389	0.38	-0.3
4,017,854	-		Sama_3389	0.38	-0.3
4,017,854	-		Sama_3389	0.38	-0.5
4,017,854	-		Sama_3389	0.38	-1.1
4,017,943	+		Sama_3389	0.45	-1.9
4,017,943	+		Sama_3389	0.45	+0.1
4,017,985	+		Sama_3389	0.49	-2.0
4,017,985	+		Sama_3389	0.49	-0.5
4,017,985	+		Sama_3389	0.49	+1.1
4,017,985	+		Sama_3389	0.49	+0.0
4,017,985	+		Sama_3389	0.49	-0.1
4,017,986	-		Sama_3389	0.49	-0.4
4,017,986	-		Sama_3389	0.49	-1.0
4,017,986	-		Sama_3389	0.49	-0.3
4,017,988	+		Sama_3389	0.49	+0.7
4,017,988	+		Sama_3389	0.49	-0.9
4,017,988	+		Sama_3389	0.49	-0.7
4,017,989	-		Sama_3389	0.49	-1.7
4,017,989	-		Sama_3389	0.49	+1.6
4,017,989	-		Sama_3389	0.49	+1.0
4,017,989	-		Sama_3389	0.49	-0.2
4,017,989	-		Sama_3389	0.49	-1.0
4,017,989	-		Sama_3389	0.49	-0.6
4,017,999	+		Sama_3389	0.50	-0.9
4,018,000	-		Sama_3389	0.50	-0.8
4,018,000	-		Sama_3389	0.50	+0.6
4,018,039	+		Sama_3389	0.53	-1.6
4,018,039	+		Sama_3389	0.53	+0.0
4,018,039	+		Sama_3389	0.53	-0.9
4,018,159	+		Sama_3389	0.62	-0.0
4,018,182	+		Sama_3389	0.64	+0.2
4,018,182	+		Sama_3389	0.64	+1.7
4,018,183	-		Sama_3389	0.64	+0.7
4,018,183	-		Sama_3389	0.64	+0.5
4,018,183	-		Sama_3389	0.64	-0.9
4,018,183	-		Sama_3389	0.64	+1.6
4,018,183	-		Sama_3389	0.64	+1.1
4,018,207	+		Sama_3389	0.66	-0.6
4,018,207	+		Sama_3389	0.66	+1.7
4,018,207	+		Sama_3389	0.66	+0.1
4,018,208	-		Sama_3389	0.66	+0.3
4,018,214	+		Sama_3389	0.67	-0.2
4,018,227	+		Sama_3389	0.68	-0.9
4,018,227	+		Sama_3389	0.68	+0.5
4,018,227	+		Sama_3389	0.68	-2.1
4,018,227	+		Sama_3389	0.68	+1.4
4,018,227	+		Sama_3389	0.68	+0.1
4,018,227	+		Sama_3389	0.68	+0.4
4,018,227	+		Sama_3389	0.68	-0.3
4,018,227	+		Sama_3389	0.68	-0.3
4,018,227	+		Sama_3389	0.68	-1.3
4,018,228	-		Sama_3389	0.68	-0.6
4,018,228	-		Sama_3389	0.68	-1.6
4,018,228	-		Sama_3389	0.68	-0.6
4,018,228	-		Sama_3389	0.68	-0.0
4,018,228	-		Sama_3389	0.68	-2.4
4,018,228	-		Sama_3389	0.68	+0.4
4,018,228	-		Sama_3389	0.68	+0.9