Strain Fitness in Shewanella amazonensis SB2B around Sama_0972

Experiment: Thymidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0971 and Sama_0972 are separated by 288 nucleotidesSama_0972 and Sama_0973 are separated by 345 nucleotides Sama_0971: Sama_0971 - nucleoside transporter (RefSeq), at 1,174,043 to 1,175,302 _0971 Sama_0972: Sama_0972 - hypothetical protein (RefSeq), at 1,175,591 to 1,176,400 _0972 Sama_0973: Sama_0973 - deoxyribose-phosphate aldolase (RefSeq), at 1,176,746 to 1,177,519 _0973 Position (kb) 1175 1176 1177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 1174.596 kb on - strand, within Sama_0971at 1174.603 kb on + strand, within Sama_0971at 1174.603 kb on + strand, within Sama_0971at 1174.622 kb on + strand, within Sama_0971at 1174.623 kb on - strand, within Sama_0971at 1174.699 kb on + strand, within Sama_0971at 1174.855 kb on + strand, within Sama_0971at 1174.869 kb on + strand, within Sama_0971at 1174.869 kb on + strand, within Sama_0971at 1174.870 kb on - strand, within Sama_0971at 1174.919 kb on + strand, within Sama_0971at 1174.919 kb on + strand, within Sama_0971at 1174.919 kb on + strand, within Sama_0971at 1174.920 kb on - strand, within Sama_0971at 1174.920 kb on - strand, within Sama_0971at 1174.920 kb on - strand, within Sama_0971at 1174.920 kb on - strand, within Sama_0971at 1174.920 kb on - strand, within Sama_0971at 1174.920 kb on - strand, within Sama_0971at 1174.920 kb on - strand, within Sama_0971at 1175.024 kb on + strand, within Sama_0971at 1175.024 kb on + strand, within Sama_0971at 1175.076 kb on + strand, within Sama_0971at 1175.077 kb on - strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.095 kb on + strand, within Sama_0971at 1175.096 kb on - strand, within Sama_0971at 1175.096 kb on - strand, within Sama_0971at 1175.096 kb on - strand, within Sama_0971at 1175.107 kb on + strand, within Sama_0971at 1175.107 kb on + strand, within Sama_0971at 1175.159 kb on - strand, within Sama_0971at 1175.165 kb on - strand, within Sama_0971at 1175.165 kb on - strand, within Sama_0971at 1175.338 kb on - strandat 1175.340 kb on + strandat 1175.340 kb on + strandat 1175.340 kb on + strandat 1175.340 kb on + strandat 1175.340 kb on + strandat 1175.340 kb on + strandat 1175.340 kb on + strandat 1175.340 kb on + strandat 1175.341 kb on - strandat 1175.341 kb on - strandat 1175.341 kb on - strandat 1175.373 kb on - strandat 1175.410 kb on - strandat 1175.478 kb on + strandat 1175.503 kb on + strandat 1175.504 kb on - strandat 1175.527 kb on + strandat 1175.528 kb on - strandat 1175.528 kb on - strandat 1175.528 kb on - strandat 1175.528 kb on - strandat 1175.566 kb on + strandat 1175.567 kb on - strandat 1175.572 kb on + strandat 1175.572 kb on + strandat 1175.572 kb on + strandat 1175.576 kb on + strandat 1175.576 kb on + strandat 1175.576 kb on + strandat 1175.673 kb on - strand, within Sama_0972at 1175.683 kb on + strand, within Sama_0972at 1175.683 kb on + strand, within Sama_0972at 1175.695 kb on + strand, within Sama_0972at 1175.695 kb on + strand, within Sama_0972at 1175.699 kb on + strand, within Sama_0972at 1175.699 kb on + strand, within Sama_0972at 1175.814 kb on + strand, within Sama_0972at 1175.814 kb on + strand, within Sama_0972at 1175.814 kb on + strand, within Sama_0972at 1175.814 kb on + strand, within Sama_0972at 1175.815 kb on - strand, within Sama_0972at 1175.816 kb on + strand, within Sama_0972at 1175.902 kb on + strand, within Sama_0972at 1175.969 kb on + strand, within Sama_0972at 1176.029 kb on + strand, within Sama_0972at 1176.078 kb on + strand, within Sama_0972at 1176.078 kb on + strand, within Sama_0972at 1176.083 kb on + strand, within Sama_0972at 1176.122 kb on + strand, within Sama_0972at 1176.146 kb on + strand, within Sama_0972at 1176.146 kb on + strand, within Sama_0972at 1176.242 kb on + strand, within Sama_0972at 1176.276 kb on + strand, within Sama_0972at 1176.276 kb on + strand, within Sama_0972at 1176.276 kb on + strand, within Sama_0972at 1176.373 kb on + strandat 1176.389 kb on + strandat 1176.398 kb on + strandat 1176.398 kb on + strandat 1176.445 kb on + strandat 1176.445 kb on + strandat 1176.445 kb on + strandat 1176.493 kb on + strandat 1176.493 kb on + strandat 1176.493 kb on + strandat 1176.493 kb on + strandat 1176.497 kb on + strandat 1176.519 kb on + strandat 1176.611 kb on + strandat 1176.611 kb on + strandat 1176.611 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.617 kb on + strandat 1176.618 kb on - strandat 1176.618 kb on - strandat 1176.618 kb on - strandat 1176.618 kb on - strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.621 kb on + strandat 1176.622 kb on - strandat 1176.666 kb on + strandat 1176.745 kb on + strandat 1176.746 kb on - strandat 1176.746 kb on - strandat 1176.746 kb on - strandat 1176.880 kb on + strand, within Sama_0973at 1176.901 kb on + strand, within Sama_0973at 1177.120 kb on + strand, within Sama_0973at 1177.120 kb on + strand, within Sama_0973at 1177.120 kb on + strand, within Sama_0973at 1177.120 kb on + strand, within Sama_0973at 1177.120 kb on + strand, within Sama_0973at 1177.120 kb on + strand, within Sama_0973at 1177.121 kb on - strand, within Sama_0973at 1177.150 kb on + strand, within Sama_0973at 1177.267 kb on + strand, within Sama_0973at 1177.268 kb on - strand, within Sama_0973at 1177.329 kb on + strand, within Sama_0973

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymidine
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1,174,596 - Sama_0971 0.44 -0.7
1,174,603 + Sama_0971 0.44 -1.2
1,174,603 + Sama_0971 0.44 +0.1
1,174,622 + Sama_0971 0.46 -1.6
1,174,623 - Sama_0971 0.46 +2.3
1,174,699 + Sama_0971 0.52 +0.9
1,174,855 + Sama_0971 0.64 -1.7
1,174,869 + Sama_0971 0.66 +1.3
1,174,869 + Sama_0971 0.66 +0.9
1,174,870 - Sama_0971 0.66 -0.0
1,174,919 + Sama_0971 0.70 +1.3
1,174,919 + Sama_0971 0.70 +2.0
1,174,919 + Sama_0971 0.70 -2.4
1,174,920 - Sama_0971 0.70 -0.6
1,174,920 - Sama_0971 0.70 -1.6
1,174,920 - Sama_0971 0.70 -2.0
1,174,920 - Sama_0971 0.70 -0.7
1,174,920 - Sama_0971 0.70 -0.0
1,174,920 - Sama_0971 0.70 -1.5
1,174,920 - Sama_0971 0.70 -1.0
1,175,024 + Sama_0971 0.78 -2.7
1,175,024 + Sama_0971 0.78 +0.1
1,175,076 + Sama_0971 0.82 +1.3
1,175,077 - Sama_0971 0.82 -1.8
1,175,095 + Sama_0971 0.83 +0.6
1,175,095 + Sama_0971 0.83 +0.0
1,175,095 + Sama_0971 0.83 +1.0
1,175,095 + Sama_0971 0.83 +0.5
1,175,095 + Sama_0971 0.83 +1.0
1,175,095 + Sama_0971 0.83 +1.7
1,175,095 + Sama_0971 0.83 +0.1
1,175,095 + Sama_0971 0.83 +0.1
1,175,096 - Sama_0971 0.84 +1.3
1,175,096 - Sama_0971 0.84 -1.5
1,175,096 - Sama_0971 0.84 -0.3
1,175,107 + Sama_0971 0.84 +1.4
1,175,107 + Sama_0971 0.84 +1.0
1,175,159 - Sama_0971 0.89 +0.1
1,175,165 - Sama_0971 0.89 -1.3
1,175,165 - Sama_0971 0.89 +0.8
1,175,338 - -1.6
1,175,340 + +0.8
1,175,340 + +1.1
1,175,340 + +2.0
1,175,340 + +1.9
1,175,340 + +2.3
1,175,340 + +2.5
1,175,340 + +0.7
1,175,340 + +1.8
1,175,341 - -1.5
1,175,341 - -1.4
1,175,341 - -0.3
1,175,373 - -2.0
1,175,410 - -0.6
1,175,478 + +4.7
1,175,503 + +4.6
1,175,504 - +0.3
1,175,527 + +3.2
1,175,528 - -1.7
1,175,528 - -4.1
1,175,528 - -3.5
1,175,528 - -3.3
1,175,566 + +3.9
1,175,567 - -1.0
1,175,572 + -0.0
1,175,572 + -0.9
1,175,572 + -0.7
1,175,576 + +0.1
1,175,576 + +0.9
1,175,576 + -1.1
1,175,673 - Sama_0972 0.10 -1.3
1,175,683 + Sama_0972 0.11 -2.3
1,175,683 + Sama_0972 0.11 -2.6
1,175,695 + Sama_0972 0.13 -2.1
1,175,695 + Sama_0972 0.13 +0.3
1,175,699 + Sama_0972 0.13 -1.5
1,175,699 + Sama_0972 0.13 -2.1
1,175,814 + Sama_0972 0.28 -1.9
1,175,814 + Sama_0972 0.28 -1.9
1,175,814 + Sama_0972 0.28 -0.7
1,175,814 + Sama_0972 0.28 -1.9
1,175,815 - Sama_0972 0.28 +0.7
1,175,816 + Sama_0972 0.28 -2.9
1,175,902 + Sama_0972 0.38 -1.7
1,175,969 + Sama_0972 0.47 +1.5
1,176,029 + Sama_0972 0.54 -1.3
1,176,078 + Sama_0972 0.60 -1.0
1,176,078 + Sama_0972 0.60 -0.3
1,176,083 + Sama_0972 0.61 -0.4
1,176,122 + Sama_0972 0.66 +0.7
1,176,146 + Sama_0972 0.69 +1.3
1,176,146 + Sama_0972 0.69 -1.9
1,176,242 + Sama_0972 0.80 +0.7
1,176,276 + Sama_0972 0.85 -1.4
1,176,276 + Sama_0972 0.85 -0.3
1,176,276 + Sama_0972 0.85 -2.3
1,176,373 + +0.6
1,176,389 + -2.5
1,176,398 + +0.2
1,176,398 + +1.2
1,176,445 + +1.6
1,176,445 + +3.8
1,176,445 + +4.5
1,176,493 + +5.8
1,176,493 + +6.9
1,176,493 + +6.5
1,176,493 + +6.6
1,176,497 + +5.5
1,176,519 + +5.6
1,176,611 + +8.7
1,176,611 + +4.1
1,176,611 + +4.0
1,176,617 + +7.8
1,176,617 + +8.0
1,176,617 + +7.9
1,176,617 + +7.1
1,176,617 + +6.1
1,176,617 + +7.4
1,176,617 + +5.8
1,176,617 + +7.2
1,176,617 + +7.3
1,176,618 - -0.1
1,176,618 - -1.0
1,176,618 - -0.3
1,176,618 - +0.3
1,176,621 + +7.0
1,176,621 + +6.8
1,176,621 + +7.9
1,176,621 + +7.0
1,176,621 + +6.5
1,176,621 + +6.9
1,176,621 + +7.3
1,176,621 + +6.4
1,176,621 + +6.5
1,176,621 + +6.1
1,176,621 + +6.6
1,176,621 + +5.2
1,176,621 + +7.3
1,176,621 + +7.5
1,176,622 - -2.0
1,176,666 + +6.1
1,176,745 + -2.6
1,176,746 - -3.3
1,176,746 - -0.7
1,176,746 - -1.0
1,176,880 + Sama_0973 0.17 -3.7
1,176,901 + Sama_0973 0.20 -0.7
1,177,120 + Sama_0973 0.48 -2.6
1,177,120 + Sama_0973 0.48 -1.0
1,177,120 + Sama_0973 0.48 -2.4
1,177,120 + Sama_0973 0.48 -2.6
1,177,120 + Sama_0973 0.48 -2.7
1,177,120 + Sama_0973 0.48 -0.7
1,177,121 - Sama_0973 0.48 -0.3
1,177,150 + Sama_0973 0.52 -2.9
1,177,267 + Sama_0973 0.67 -2.3
1,177,268 - Sama_0973 0.67 -2.6
1,177,329 + Sama_0973 0.75 -3.2

Or see this region's nucleotide sequence