Experiment: Thymidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0745 and Sama_0746 are separated by 439 nucleotides Sama_0746 and Sama_0747 are separated by 119 nucleotides
Sama_0745: Sama_0745 - catalase (RefSeq), at 915,907 to 918,123
_0745
Sama_0746: Sama_0746 - DMT family permease (RefSeq), at 918,563 to 919,456
_0746
Sama_0747: Sama_0747 - signal transduction histidine kinase-like protein (RefSeq), at 919,576 to 923,439
_0747
Position (kb) 918
919
920 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 917.669 kb on + strand, within Sama_0745 at 917.796 kb on - strand, within Sama_0745 at 917.797 kb on + strand, within Sama_0745 at 917.797 kb on + strand, within Sama_0745 at 917.797 kb on + strand, within Sama_0745 at 917.797 kb on + strand, within Sama_0745 at 917.797 kb on + strand, within Sama_0745 at 917.797 kb on + strand, within Sama_0745 at 917.797 kb on + strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.798 kb on - strand, within Sama_0745 at 917.840 kb on + strand, within Sama_0745 at 917.841 kb on - strand, within Sama_0745 at 917.906 kb on - strand at 917.942 kb on + strand at 917.942 kb on + strand at 917.948 kb on + strand at 917.948 kb on + strand at 917.948 kb on + strand at 917.948 kb on + strand at 917.949 kb on - strand at 917.949 kb on - strand at 917.949 kb on - strand at 917.961 kb on - strand at 918.023 kb on + strand at 918.023 kb on + strand at 918.023 kb on + strand at 918.024 kb on - strand at 918.024 kb on - strand at 918.024 kb on - strand at 918.129 kb on + strand at 918.130 kb on - strand at 918.130 kb on - strand at 918.156 kb on + strand at 918.156 kb on + strand at 918.156 kb on + strand at 918.175 kb on + strand at 918.175 kb on + strand at 918.175 kb on + strand at 918.175 kb on + strand at 918.175 kb on + strand at 918.175 kb on + strand at 918.176 kb on - strand at 918.176 kb on - strand at 918.176 kb on - strand at 918.176 kb on - strand at 918.176 kb on - strand at 918.176 kb on - strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.177 kb on + strand at 918.178 kb on - strand at 918.178 kb on - strand at 918.178 kb on - strand at 918.178 kb on - strand at 918.178 kb on - strand at 918.178 kb on - strand at 918.235 kb on + strand at 918.236 kb on - strand at 918.236 kb on - strand at 918.236 kb on - strand at 918.260 kb on + strand at 918.261 kb on - strand at 918.267 kb on + strand at 918.268 kb on - strand at 918.273 kb on + strand at 918.290 kb on + strand at 918.299 kb on - strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.407 kb on + strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.408 kb on - strand at 918.441 kb on + strand at 918.442 kb on - strand at 918.455 kb on + strand at 918.456 kb on - strand at 918.456 kb on - strand at 918.497 kb on + strand at 918.515 kb on - strand at 918.523 kb on + strand at 918.690 kb on + strand, within Sama_0746 at 918.719 kb on - strand, within Sama_0746 at 918.719 kb on - strand, within Sama_0746 at 918.719 kb on - strand, within Sama_0746 at 918.719 kb on - strand, within Sama_0746 at 918.719 kb on - strand, within Sama_0746 at 918.787 kb on + strand, within Sama_0746 at 918.788 kb on - strand, within Sama_0746 at 918.818 kb on + strand, within Sama_0746 at 918.819 kb on - strand, within Sama_0746 at 918.843 kb on - strand, within Sama_0746 at 918.963 kb on + strand, within Sama_0746 at 918.963 kb on + strand, within Sama_0746 at 918.993 kb on + strand, within Sama_0746 at 919.007 kb on - strand, within Sama_0746 at 919.067 kb on + strand, within Sama_0746 at 919.067 kb on + strand, within Sama_0746 at 919.068 kb on - strand, within Sama_0746 at 919.068 kb on - strand, within Sama_0746 at 919.068 kb on - strand, within Sama_0746 at 919.089 kb on + strand, within Sama_0746 at 919.089 kb on + strand, within Sama_0746 at 919.089 kb on + strand, within Sama_0746 at 919.090 kb on - strand, within Sama_0746 at 919.090 kb on - strand, within Sama_0746 at 919.154 kb on + strand, within Sama_0746 at 919.154 kb on + strand, within Sama_0746 at 919.155 kb on - strand, within Sama_0746 at 919.229 kb on + strand, within Sama_0746 at 919.390 kb on - strand at 919.428 kb on + strand at 919.429 kb on - strand at 919.429 kb on - strand at 919.488 kb on - strand at 919.490 kb on + strand at 919.490 kb on + strand at 919.491 kb on - strand at 919.491 kb on - strand at 919.514 kb on + strand at 919.522 kb on - strand at 919.522 kb on - strand at 919.522 kb on - strand at 919.522 kb on - strand at 919.547 kb on + strand at 919.548 kb on - strand at 919.551 kb on - strand at 919.592 kb on + strand at 919.592 kb on + strand at 919.593 kb on - strand at 919.593 kb on - strand at 919.638 kb on - strand at 919.638 kb on - strand at 919.641 kb on + strand at 919.641 kb on + strand at 919.642 kb on - strand at 919.642 kb on - strand at 919.642 kb on - strand at 919.642 kb on - strand at 919.663 kb on + strand at 919.711 kb on + strand at 919.729 kb on - strand at 919.783 kb on + strand at 919.783 kb on + strand at 919.784 kb on - strand at 919.825 kb on + strand at 919.825 kb on + strand at 919.825 kb on + strand at 919.825 kb on + strand at 919.825 kb on + strand at 919.825 kb on + strand at 919.826 kb on - strand at 919.826 kb on - strand at 919.826 kb on - strand at 919.836 kb on + strand at 919.846 kb on + strand at 919.864 kb on + strand at 919.864 kb on + strand at 919.865 kb on - strand at 919.865 kb on - strand at 919.865 kb on - strand at 919.882 kb on + strand at 919.883 kb on - strand at 919.883 kb on - strand at 919.883 kb on - strand at 919.883 kb on - strand at 919.920 kb on + strand at 919.921 kb on - strand at 919.927 kb on + strand at 919.927 kb on + strand at 919.927 kb on + strand at 919.927 kb on + strand at 919.927 kb on + strand at 919.927 kb on + strand at 919.928 kb on - strand at 919.928 kb on - strand at 919.950 kb on + strand at 919.951 kb on - strand at 919.951 kb on - strand at 920.046 kb on + strand, within Sama_0747 at 920.047 kb on - strand, within Sama_0747 at 920.065 kb on - strand, within Sama_0747 at 920.067 kb on + strand, within Sama_0747 at 920.067 kb on + strand, within Sama_0747 at 920.090 kb on + strand, within Sama_0747 at 920.090 kb on + strand, within Sama_0747 at 920.090 kb on + strand, within Sama_0747 at 920.091 kb on - strand, within Sama_0747 at 920.091 kb on - strand, within Sama_0747 at 920.091 kb on - strand, within Sama_0747 at 920.091 kb on - strand, within Sama_0747 at 920.091 kb on - strand, within Sama_0747 at 920.091 kb on - strand, within Sama_0747 at 920.147 kb on + strand, within Sama_0747 at 920.147 kb on + strand, within Sama_0747 at 920.148 kb on - strand, within Sama_0747 at 920.181 kb on + strand, within Sama_0747 at 920.224 kb on + strand, within Sama_0747 at 920.224 kb on + strand, within Sama_0747 at 920.287 kb on + strand, within Sama_0747 at 920.288 kb on - strand, within Sama_0747 at 920.288 kb on - strand, within Sama_0747 at 920.288 kb on - strand, within Sama_0747 at 920.288 kb on - strand, within Sama_0747 at 920.312 kb on + strand, within Sama_0747 at 920.312 kb on + strand, within Sama_0747 at 920.312 kb on + strand, within Sama_0747 at 920.312 kb on + strand, within Sama_0747 at 920.313 kb on - strand, within Sama_0747 at 920.313 kb on - strand, within Sama_0747 at 920.322 kb on + strand, within Sama_0747 at 920.323 kb on - strand, within Sama_0747 at 920.323 kb on - strand, within Sama_0747 at 920.323 kb on - strand, within Sama_0747 at 920.359 kb on + strand, within Sama_0747 at 920.359 kb on + strand, within Sama_0747 at 920.359 kb on + strand, within Sama_0747 at 920.360 kb on - strand, within Sama_0747 at 920.360 kb on - strand, within Sama_0747 at 920.435 kb on + strand, within Sama_0747 at 920.435 kb on + strand, within Sama_0747 at 920.435 kb on + strand, within Sama_0747 at 920.436 kb on - strand, within Sama_0747 at 920.436 kb on - strand, within Sama_0747 at 920.436 kb on - strand, within Sama_0747 at 920.436 kb on - strand, within Sama_0747 at 920.436 kb on - strand, within Sama_0747 at 920.436 kb on - strand, within Sama_0747 at 920.436 kb on - strand, within Sama_0747
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine remove 917,669 + Sama_0745 0.79 -0.2 917,796 - Sama_0745 0.85 +0.1 917,797 + Sama_0745 0.85 +0.9 917,797 + Sama_0745 0.85 +1.4 917,797 + Sama_0745 0.85 +0.4 917,797 + Sama_0745 0.85 +0.3 917,797 + Sama_0745 0.85 +0.4 917,797 + Sama_0745 0.85 -0.5 917,797 + Sama_0745 0.85 +0.7 917,798 - Sama_0745 0.85 +1.4 917,798 - Sama_0745 0.85 -0.1 917,798 - Sama_0745 0.85 -1.6 917,798 - Sama_0745 0.85 +1.4 917,798 - Sama_0745 0.85 +0.1 917,798 - Sama_0745 0.85 +1.4 917,798 - Sama_0745 0.85 +0.2 917,798 - Sama_0745 0.85 +1.4 917,798 - Sama_0745 0.85 +1.6 917,840 + Sama_0745 0.87 -0.2 917,841 - Sama_0745 0.87 +0.8 917,906 - -1.0 917,942 + +0.6 917,942 + +1.4 917,948 + +0.6 917,948 + -0.2 917,948 + -0.2 917,948 + -1.1 917,949 - -0.9 917,949 - -1.6 917,949 - +0.1 917,961 - +0.4 918,023 + +1.8 918,023 + +1.4 918,023 + +1.2 918,024 - -1.6 918,024 - -0.7 918,024 - +0.3 918,129 + -0.5 918,130 - -0.5 918,130 - +0.0 918,156 + +0.8 918,156 + +0.4 918,156 + +1.4 918,175 + +0.5 918,175 + +0.4 918,175 + +0.4 918,175 + +0.2 918,175 + +0.6 918,175 + +1.4 918,176 - -0.6 918,176 - +0.3 918,176 - +1.4 918,176 - -0.4 918,176 - +1.3 918,176 - +0.3 918,177 + +0.5 918,177 + +1.0 918,177 + +0.4 918,177 + +1.7 918,177 + -0.8 918,177 + +1.7 918,177 + -1.6 918,177 + +0.9 918,177 + +1.1 918,177 + +0.8 918,177 + +2.0 918,177 + +0.2 918,177 + +0.9 918,178 - -1.9 918,178 - +0.7 918,178 - -1.2 918,178 - +0.3 918,178 - +1.4 918,178 - -0.7 918,235 + +1.3 918,236 - -2.7 918,236 - +0.5 918,236 - +0.7 918,260 + +1.0 918,261 - -0.8 918,267 + +1.1 918,268 - +0.3 918,273 + +0.3 918,290 + -0.5 918,299 - -0.3 918,407 + +0.6 918,407 + +1.2 918,407 + +1.0 918,407 + -0.2 918,407 + +1.3 918,407 + -0.4 918,407 + +1.7 918,407 + +1.5 918,407 + +1.4 918,407 + +0.8 918,407 + +0.5 918,407 + +0.7 918,407 + +0.8 918,407 + -0.4 918,407 + -0.2 918,407 + +1.1 918,408 - +0.3 918,408 - -0.6 918,408 - -0.6 918,408 - -1.4 918,408 - +0.6 918,408 - +0.2 918,408 - -1.3 918,408 - -1.6 918,408 - +1.1 918,408 - +1.2 918,441 + +0.7 918,442 - -0.3 918,455 + -0.2 918,456 - -2.6 918,456 - -0.2 918,497 + +1.4 918,515 - -0.2 918,523 + -0.9 918,690 + Sama_0746 0.14 +1.2 918,719 - Sama_0746 0.17 +0.3 918,719 - Sama_0746 0.17 +0.4 918,719 - Sama_0746 0.17 -0.3 918,719 - Sama_0746 0.17 -0.6 918,719 - Sama_0746 0.17 +0.9 918,787 + Sama_0746 0.25 +1.4 918,788 - Sama_0746 0.25 +1.0 918,818 + Sama_0746 0.29 -0.4 918,819 - Sama_0746 0.29 +0.0 918,843 - Sama_0746 0.31 +1.4 918,963 + Sama_0746 0.45 -2.6 918,963 + Sama_0746 0.45 -0.3 918,993 + Sama_0746 0.48 +0.1 919,007 - Sama_0746 0.50 -0.2 919,067 + Sama_0746 0.56 +1.7 919,067 + Sama_0746 0.56 -0.5 919,068 - Sama_0746 0.56 -0.4 919,068 - Sama_0746 0.56 -0.6 919,068 - Sama_0746 0.56 +0.4 919,089 + Sama_0746 0.59 +0.4 919,089 + Sama_0746 0.59 -0.9 919,089 + Sama_0746 0.59 +0.4 919,090 - Sama_0746 0.59 -0.2 919,090 - Sama_0746 0.59 +0.4 919,154 + Sama_0746 0.66 +1.4 919,154 + Sama_0746 0.66 +2.0 919,155 - Sama_0746 0.66 +0.4 919,229 + Sama_0746 0.74 +0.9 919,390 - -0.4 919,428 + +0.8 919,429 - -1.6 919,429 - +0.3 919,488 - +1.4 919,490 + +0.5 919,490 + +0.7 919,491 - -0.0 919,491 - +2.4 919,514 + +0.9 919,522 - +0.6 919,522 - -0.2 919,522 - +0.3 919,522 - -0.2 919,547 + +0.1 919,548 - -1.2 919,551 - -1.6 919,592 + +0.4 919,592 + -0.7 919,593 - -1.3 919,593 - +0.7 919,638 - -0.8 919,638 - +1.0 919,641 + -1.7 919,641 + +0.2 919,642 - -1.0 919,642 - -0.2 919,642 - -0.3 919,642 - -0.4 919,663 + -1.3 919,711 + -1.2 919,729 - +0.2 919,783 + +0.4 919,783 + +0.0 919,784 - +0.2 919,825 + +1.1 919,825 + -0.4 919,825 + -1.7 919,825 + -2.6 919,825 + -0.8 919,825 + +0.0 919,826 - -2.0 919,826 - +0.4 919,826 - -0.4 919,836 + -0.2 919,846 + -2.0 919,864 + +3.0 919,864 + -0.2 919,865 - -0.7 919,865 - -1.2 919,865 - +0.4 919,882 + -1.0 919,883 - -1.3 919,883 - +0.0 919,883 - -1.2 919,883 - -0.2 919,920 + -2.3 919,921 - -0.6 919,927 + -0.4 919,927 + -1.4 919,927 + -0.6 919,927 + -1.7 919,927 + -0.9 919,927 + -0.6 919,928 - -1.7 919,928 - +0.1 919,950 + -0.2 919,951 - -0.8 919,951 - -1.2 920,046 + Sama_0747 0.12 +0.1 920,047 - Sama_0747 0.12 -0.6 920,065 - Sama_0747 0.13 -0.1 920,067 + Sama_0747 0.13 +1.2 920,067 + Sama_0747 0.13 -0.2 920,090 + Sama_0747 0.13 +0.1 920,090 + Sama_0747 0.13 -0.6 920,090 + Sama_0747 0.13 +0.4 920,091 - Sama_0747 0.13 -2.6 920,091 - Sama_0747 0.13 -1.6 920,091 - Sama_0747 0.13 -2.0 920,091 - Sama_0747 0.13 -0.8 920,091 - Sama_0747 0.13 -1.0 920,091 - Sama_0747 0.13 -1.0 920,147 + Sama_0747 0.15 -0.4 920,147 + Sama_0747 0.15 -2.0 920,148 - Sama_0747 0.15 -1.0 920,181 + Sama_0747 0.16 -0.3 920,224 + Sama_0747 0.17 -2.4 920,224 + Sama_0747 0.17 -1.7 920,287 + Sama_0747 0.18 -0.8 920,288 - Sama_0747 0.18 -1.1 920,288 - Sama_0747 0.18 -1.0 920,288 - Sama_0747 0.18 -0.7 920,288 - Sama_0747 0.18 -0.3 920,312 + Sama_0747 0.19 -0.3 920,312 + Sama_0747 0.19 -2.3 920,312 + Sama_0747 0.19 +1.2 920,312 + Sama_0747 0.19 -0.7 920,313 - Sama_0747 0.19 -1.0 920,313 - Sama_0747 0.19 +0.9 920,322 + Sama_0747 0.19 -1.0 920,323 - Sama_0747 0.19 +0.6 920,323 - Sama_0747 0.19 +1.1 920,323 - Sama_0747 0.19 -2.7 920,359 + Sama_0747 0.20 -0.5 920,359 + Sama_0747 0.20 +1.2 920,359 + Sama_0747 0.20 -0.7 920,360 - Sama_0747 0.20 -0.5 920,360 - Sama_0747 0.20 +0.4 920,435 + Sama_0747 0.22 -0.9 920,435 + Sama_0747 0.22 -1.2 920,435 + Sama_0747 0.22 +0.2 920,436 - Sama_0747 0.22 -0.4 920,436 - Sama_0747 0.22 +1.4 920,436 - Sama_0747 0.22 -0.4 920,436 - Sama_0747 0.22 +0.7 920,436 - Sama_0747 0.22 +0.1 920,436 - Sama_0747 0.22 -1.7 920,436 - Sama_0747 0.22 -1.2
Or see this region's nucleotide sequence