Experiment: Thymidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0434 and Sama_0435 are separated by 133 nucleotides Sama_0435 and Sama_0436 are separated by 227 nucleotides Sama_0436 and Sama_0437 are separated by 109 nucleotides
Sama_0434: Sama_0434 - putative secreted hydrolase (RefSeq), at 533,075 to 534,367
_0434
Sama_0435: Sama_0435 - putative phosphoglycerate mutase family protein (RefSeq), at 534,501 to 535,082
_0435
Sama_0436: Sama_0436 - putative lipoprotein (RefSeq), at 535,310 to 535,879
_0436
Sama_0437: Sama_0437 - response regulator receiver protein (RefSeq), at 535,989 to 536,702
_0437
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.617 kb on + strand, within Sama_0434 at 533.618 kb on - strand, within Sama_0434 at 533.618 kb on - strand, within Sama_0434 at 533.618 kb on - strand, within Sama_0434 at 533.668 kb on + strand, within Sama_0434 at 533.668 kb on + strand, within Sama_0434 at 533.669 kb on - strand, within Sama_0434 at 533.669 kb on - strand, within Sama_0434 at 533.669 kb on - strand, within Sama_0434 at 533.669 kb on - strand, within Sama_0434 at 533.669 kb on - strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.670 kb on + strand, within Sama_0434 at 533.671 kb on - strand, within Sama_0434 at 533.671 kb on - strand, within Sama_0434 at 533.671 kb on - strand, within Sama_0434 at 533.671 kb on - strand, within Sama_0434 at 533.671 kb on - strand, within Sama_0434 at 533.671 kb on - strand, within Sama_0434 at 533.671 kb on - strand, within Sama_0434 at 533.692 kb on + strand, within Sama_0434 at 533.693 kb on - strand, within Sama_0434 at 533.735 kb on - strand, within Sama_0434 at 533.735 kb on - strand, within Sama_0434 at 533.746 kb on - strand, within Sama_0434 at 534.039 kb on + strand, within Sama_0434 at 534.039 kb on + strand, within Sama_0434 at 534.039 kb on + strand, within Sama_0434 at 534.040 kb on - strand, within Sama_0434 at 534.040 kb on - strand, within Sama_0434 at 534.040 kb on - strand, within Sama_0434 at 534.242 kb on + strand at 534.242 kb on + strand at 534.242 kb on + strand at 534.268 kb on + strand at 534.268 kb on + strand at 534.333 kb on + strand at 534.333 kb on + strand at 534.333 kb on + strand at 534.333 kb on + strand at 534.333 kb on + strand at 534.334 kb on - strand at 534.334 kb on - strand at 534.358 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.425 kb on + strand at 534.426 kb on - strand at 534.426 kb on - strand at 534.426 kb on - strand at 534.468 kb on + strand at 534.538 kb on + strand at 534.541 kb on + strand at 534.542 kb on - strand at 534.560 kb on + strand, within Sama_0435 at 534.561 kb on - strand, within Sama_0435 at 534.613 kb on - strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.729 kb on + strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.730 kb on - strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.731 kb on + strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.732 kb on - strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.733 kb on + strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.734 kb on - strand, within Sama_0435 at 534.785 kb on + strand, within Sama_0435 at 534.785 kb on + strand, within Sama_0435 at 534.785 kb on + strand, within Sama_0435 at 534.786 kb on - strand, within Sama_0435 at 534.786 kb on - strand, within Sama_0435 at 534.786 kb on - strand, within Sama_0435 at 534.823 kb on - strand, within Sama_0435 at 534.837 kb on + strand, within Sama_0435 at 534.925 kb on + strand, within Sama_0435 at 534.925 kb on + strand, within Sama_0435 at 534.925 kb on + strand, within Sama_0435 at 534.926 kb on - strand, within Sama_0435 at 534.926 kb on - strand, within Sama_0435 at 534.926 kb on - strand, within Sama_0435 at 534.964 kb on + strand, within Sama_0435 at 534.964 kb on + strand, within Sama_0435 at 535.092 kb on + strand at 535.109 kb on + strand at 535.122 kb on + strand at 535.122 kb on + strand at 535.122 kb on + strand at 535.183 kb on + strand at 535.183 kb on + strand at 535.183 kb on + strand at 535.285 kb on + strand at 535.286 kb on - strand at 535.323 kb on - strand at 535.323 kb on - strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.326 kb on + strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.327 kb on - strand at 535.344 kb on + strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.345 kb on - strand at 535.363 kb on + strand at 535.363 kb on + strand at 535.429 kb on + strand, within Sama_0436 at 535.430 kb on - strand, within Sama_0436 at 535.430 kb on - strand, within Sama_0436 at 535.433 kb on + strand, within Sama_0436 at 535.433 kb on + strand, within Sama_0436 at 535.433 kb on + strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.434 kb on - strand, within Sama_0436 at 535.435 kb on + strand, within Sama_0436 at 535.435 kb on + strand, within Sama_0436 at 535.435 kb on + strand, within Sama_0436 at 535.488 kb on + strand, within Sama_0436 at 535.489 kb on - strand, within Sama_0436 at 535.489 kb on - strand, within Sama_0436 at 535.508 kb on + strand, within Sama_0436 at 535.508 kb on + strand, within Sama_0436 at 535.508 kb on + strand, within Sama_0436 at 535.509 kb on - strand, within Sama_0436 at 535.537 kb on + strand, within Sama_0436 at 535.537 kb on + strand, within Sama_0436 at 535.537 kb on + strand, within Sama_0436 at 535.538 kb on - strand, within Sama_0436 at 535.538 kb on - strand, within Sama_0436 at 535.538 kb on - strand, within Sama_0436 at 535.552 kb on + strand, within Sama_0436 at 535.553 kb on - strand, within Sama_0436 at 535.553 kb on - strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.571 kb on + strand, within Sama_0436 at 535.572 kb on - strand, within Sama_0436 at 535.572 kb on - strand, within Sama_0436 at 535.572 kb on - strand, within Sama_0436 at 535.575 kb on - strand, within Sama_0436 at 535.608 kb on + strand, within Sama_0436 at 535.608 kb on + strand, within Sama_0436 at 535.608 kb on + strand, within Sama_0436 at 535.615 kb on + strand, within Sama_0436 at 535.616 kb on - strand, within Sama_0436 at 535.634 kb on + strand, within Sama_0436 at 535.634 kb on + strand, within Sama_0436 at 535.634 kb on + strand, within Sama_0436 at 535.636 kb on + strand, within Sama_0436 at 535.636 kb on + strand, within Sama_0436 at 535.637 kb on - strand, within Sama_0436 at 535.637 kb on - strand, within Sama_0436 at 535.637 kb on - strand, within Sama_0436 at 535.671 kb on + strand, within Sama_0436 at 535.750 kb on + strand, within Sama_0436 at 535.750 kb on + strand, within Sama_0436 at 535.751 kb on - strand, within Sama_0436 at 535.757 kb on + strand, within Sama_0436 at 535.758 kb on - strand, within Sama_0436 at 535.758 kb on - strand, within Sama_0436 at 535.758 kb on - strand, within Sama_0436 at 535.830 kb on - strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.831 kb on + strand at 535.832 kb on - strand at 535.852 kb on + strand at 535.871 kb on + strand at 535.871 kb on + strand at 535.871 kb on + strand at 535.872 kb on - strand at 535.877 kb on + strand at 535.877 kb on + strand at 535.877 kb on + strand at 535.877 kb on + strand at 535.878 kb on - strand at 535.878 kb on - strand at 535.878 kb on - strand at 535.945 kb on + strand at 535.945 kb on + strand at 535.946 kb on - strand at 535.946 kb on - strand at 535.949 kb on + strand at 535.949 kb on + strand at 535.949 kb on + strand at 535.949 kb on + strand at 535.950 kb on - strand at 535.953 kb on + strand at 535.954 kb on - strand at 535.967 kb on + strand at 535.967 kb on + strand at 535.968 kb on - strand at 535.968 kb on - strand at 535.968 kb on - strand at 535.968 kb on - strand at 535.968 kb on - strand at 536.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine remove 533,617 + Sama_0434 0.42 +0.3 533,618 - Sama_0434 0.42 -0.0 533,618 - Sama_0434 0.42 +0.4 533,618 - Sama_0434 0.42 +0.0 533,668 + Sama_0434 0.46 +0.6 533,668 + Sama_0434 0.46 -1.4 533,669 - Sama_0434 0.46 +2.6 533,669 - Sama_0434 0.46 -0.6 533,669 - Sama_0434 0.46 +0.8 533,669 - Sama_0434 0.46 +0.8 533,669 - Sama_0434 0.46 +0.1 533,670 + Sama_0434 0.46 -0.1 533,670 + Sama_0434 0.46 +0.1 533,670 + Sama_0434 0.46 -0.1 533,670 + Sama_0434 0.46 +0.8 533,670 + Sama_0434 0.46 -0.7 533,670 + Sama_0434 0.46 -1.4 533,670 + Sama_0434 0.46 +0.9 533,670 + Sama_0434 0.46 +0.7 533,670 + Sama_0434 0.46 -0.6 533,671 - Sama_0434 0.46 -0.0 533,671 - Sama_0434 0.46 +0.9 533,671 - Sama_0434 0.46 -0.2 533,671 - Sama_0434 0.46 -0.2 533,671 - Sama_0434 0.46 -0.6 533,671 - Sama_0434 0.46 +0.2 533,671 - Sama_0434 0.46 -1.3 533,692 + Sama_0434 0.48 +1.6 533,693 - Sama_0434 0.48 -0.3 533,735 - Sama_0434 0.51 -0.0 533,735 - Sama_0434 0.51 +0.3 533,746 - Sama_0434 0.52 +2.1 534,039 + Sama_0434 0.75 +2.0 534,039 + Sama_0434 0.75 -0.4 534,039 + Sama_0434 0.75 -1.4 534,040 - Sama_0434 0.75 -0.8 534,040 - Sama_0434 0.75 +1.5 534,040 - Sama_0434 0.75 +0.5 534,242 + -1.2 534,242 + -1.6 534,242 + +1.1 534,268 + +0.3 534,268 + -0.3 534,333 + -1.2 534,333 + -1.0 534,333 + -0.0 534,333 + -0.4 534,333 + -1.1 534,334 - -0.2 534,334 - +1.9 534,358 + +1.3 534,425 + +0.5 534,425 + -0.2 534,425 + +0.8 534,425 + -2.0 534,425 + -1.1 534,426 - +0.4 534,426 - +2.6 534,426 - +0.6 534,468 + -0.7 534,538 + +1.4 534,541 + +0.1 534,542 - -0.3 534,560 + Sama_0435 0.10 -0.7 534,561 - Sama_0435 0.10 +0.3 534,613 - Sama_0435 0.19 -1.0 534,729 + Sama_0435 0.39 -1.5 534,729 + Sama_0435 0.39 +0.5 534,729 + Sama_0435 0.39 +1.0 534,729 + Sama_0435 0.39 -0.2 534,729 + Sama_0435 0.39 +0.2 534,729 + Sama_0435 0.39 +2.0 534,729 + Sama_0435 0.39 -1.0 534,729 + Sama_0435 0.39 -0.2 534,729 + Sama_0435 0.39 -1.0 534,730 - Sama_0435 0.39 -1.0 534,730 - Sama_0435 0.39 -1.7 534,730 - Sama_0435 0.39 -0.4 534,730 - Sama_0435 0.39 -0.2 534,730 - Sama_0435 0.39 +0.8 534,730 - Sama_0435 0.39 +0.3 534,730 - Sama_0435 0.39 -0.3 534,730 - Sama_0435 0.39 -0.0 534,730 - Sama_0435 0.39 +0.3 534,730 - Sama_0435 0.39 +1.1 534,731 + Sama_0435 0.40 -0.4 534,731 + Sama_0435 0.40 +0.4 534,731 + Sama_0435 0.40 -0.3 534,731 + Sama_0435 0.40 -0.0 534,732 - Sama_0435 0.40 +0.7 534,732 - Sama_0435 0.40 +0.4 534,732 - Sama_0435 0.40 -0.9 534,732 - Sama_0435 0.40 -1.7 534,732 - Sama_0435 0.40 -2.5 534,732 - Sama_0435 0.40 -2.5 534,732 - Sama_0435 0.40 -1.0 534,733 + Sama_0435 0.40 +0.4 534,733 + Sama_0435 0.40 +0.8 534,733 + Sama_0435 0.40 +0.1 534,733 + Sama_0435 0.40 -1.4 534,733 + Sama_0435 0.40 -1.0 534,734 - Sama_0435 0.40 -2.1 534,734 - Sama_0435 0.40 -0.5 534,734 - Sama_0435 0.40 -2.3 534,734 - Sama_0435 0.40 -0.7 534,785 + Sama_0435 0.49 +0.6 534,785 + Sama_0435 0.49 +1.6 534,785 + Sama_0435 0.49 +0.6 534,786 - Sama_0435 0.49 -0.9 534,786 - Sama_0435 0.49 +1.2 534,786 - Sama_0435 0.49 -0.0 534,823 - Sama_0435 0.55 -0.0 534,837 + Sama_0435 0.58 -0.6 534,925 + Sama_0435 0.73 -2.8 534,925 + Sama_0435 0.73 -0.2 534,925 + Sama_0435 0.73 -2.0 534,926 - Sama_0435 0.73 +0.8 534,926 - Sama_0435 0.73 +1.3 534,926 - Sama_0435 0.73 -1.5 534,964 + Sama_0435 0.80 -0.7 534,964 + Sama_0435 0.80 -0.3 535,092 + +0.3 535,109 + -0.5 535,122 + +0.6 535,122 + -0.6 535,122 + -1.0 535,183 + +0.5 535,183 + +0.4 535,183 + -0.2 535,285 + +0.2 535,286 - -0.4 535,323 - -2.1 535,323 - +0.4 535,326 + -0.3 535,326 + +1.8 535,326 + +1.6 535,326 + +0.3 535,326 + -0.0 535,326 + -1.2 535,327 - -0.0 535,327 - +0.9 535,327 - +0.6 535,327 - +0.3 535,327 - +1.6 535,327 - -0.2 535,327 - +0.1 535,327 - +1.8 535,344 + -0.2 535,345 - +0.4 535,345 - +0.5 535,345 - -0.7 535,345 - -0.2 535,345 - +0.6 535,345 - +0.0 535,363 + -0.2 535,363 + +0.7 535,429 + Sama_0436 0.21 -0.9 535,430 - Sama_0436 0.21 -0.3 535,430 - Sama_0436 0.21 +0.2 535,433 + Sama_0436 0.22 -1.4 535,433 + Sama_0436 0.22 +0.4 535,433 + Sama_0436 0.22 -0.8 535,434 - Sama_0436 0.22 -1.1 535,434 - Sama_0436 0.22 -0.7 535,434 - Sama_0436 0.22 +1.2 535,434 - Sama_0436 0.22 +0.3 535,434 - Sama_0436 0.22 -0.3 535,434 - Sama_0436 0.22 -0.0 535,434 - Sama_0436 0.22 -1.2 535,434 - Sama_0436 0.22 -1.6 535,434 - Sama_0436 0.22 -0.2 535,434 - Sama_0436 0.22 -0.0 535,434 - Sama_0436 0.22 +0.2 535,434 - Sama_0436 0.22 +1.0 535,434 - Sama_0436 0.22 +0.2 535,435 + Sama_0436 0.22 +0.6 535,435 + Sama_0436 0.22 -0.5 535,435 + Sama_0436 0.22 -0.3 535,488 + Sama_0436 0.31 -0.9 535,489 - Sama_0436 0.31 -0.2 535,489 - Sama_0436 0.31 -0.2 535,508 + Sama_0436 0.35 -1.6 535,508 + Sama_0436 0.35 -0.3 535,508 + Sama_0436 0.35 -2.1 535,509 - Sama_0436 0.35 +0.2 535,537 + Sama_0436 0.40 -0.9 535,537 + Sama_0436 0.40 +1.2 535,537 + Sama_0436 0.40 +0.6 535,538 - Sama_0436 0.40 +0.6 535,538 - Sama_0436 0.40 +1.0 535,538 - Sama_0436 0.40 +0.6 535,552 + Sama_0436 0.42 -0.3 535,553 - Sama_0436 0.43 -0.1 535,553 - Sama_0436 0.43 +0.5 535,571 + Sama_0436 0.46 -0.8 535,571 + Sama_0436 0.46 -1.1 535,571 + Sama_0436 0.46 +0.2 535,571 + Sama_0436 0.46 -0.6 535,571 + Sama_0436 0.46 -0.4 535,571 + Sama_0436 0.46 +0.3 535,571 + Sama_0436 0.46 +0.2 535,572 - Sama_0436 0.46 +1.0 535,572 - Sama_0436 0.46 -0.3 535,572 - Sama_0436 0.46 -1.1 535,575 - Sama_0436 0.46 +1.2 535,608 + Sama_0436 0.52 -0.0 535,608 + Sama_0436 0.52 +0.4 535,608 + Sama_0436 0.52 -0.2 535,615 + Sama_0436 0.54 +0.5 535,616 - Sama_0436 0.54 +0.6 535,634 + Sama_0436 0.57 +0.1 535,634 + Sama_0436 0.57 -1.2 535,634 + Sama_0436 0.57 +0.7 535,636 + Sama_0436 0.57 +0.0 535,636 + Sama_0436 0.57 -0.3 535,637 - Sama_0436 0.57 -1.7 535,637 - Sama_0436 0.57 +0.1 535,637 - Sama_0436 0.57 -0.2 535,671 + Sama_0436 0.63 +0.5 535,750 + Sama_0436 0.77 +0.1 535,750 + Sama_0436 0.77 -0.7 535,751 - Sama_0436 0.77 +1.0 535,757 + Sama_0436 0.78 -0.5 535,758 - Sama_0436 0.79 +0.7 535,758 - Sama_0436 0.79 +0.4 535,758 - Sama_0436 0.79 +0.2 535,830 - +0.4 535,831 + +0.4 535,831 + -0.2 535,831 + +1.9 535,832 - -0.2 535,852 + +0.5 535,871 + +0.7 535,871 + +1.9 535,871 + -1.4 535,872 - -1.1 535,877 + -1.0 535,877 + -0.2 535,877 + +0.8 535,877 + -1.0 535,878 - +0.6 535,878 - -0.4 535,878 - +0.8 535,945 + +0.1 535,945 + +0.2 535,946 - -0.9 535,946 - -1.8 535,949 + -0.4 535,949 + -1.5 535,949 + +1.6 535,949 + +0.4 535,950 - +0.1 535,953 + -0.2 535,954 - -1.7 535,967 + -0.5 535,967 + +0.8 535,968 - -0.6 535,968 - -2.0 535,968 - -1.4 535,968 - -0.8 535,968 - -1.4 536,006 + -1.1
Or see this region's nucleotide sequence