Experiment: Thymidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0315 and Sama_0316 are separated by 133 nucleotides
Sama_0315: Sama_0315 - hypothetical protein (RefSeq), at 380,381 to 380,974
_0315
Sama_0316: Sama_0316 - hypothetical protein (RefSeq), at 381,108 to 381,935
_0316
Position (kb) 381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 380.120 kb on - strand at 380.123 kb on - strand at 380.141 kb on + strand at 380.142 kb on - strand at 380.142 kb on - strand at 380.190 kb on + strand at 380.193 kb on + strand at 380.193 kb on + strand at 380.233 kb on + strand at 380.234 kb on - strand at 380.242 kb on + strand at 380.309 kb on + strand at 380.310 kb on - strand at 380.343 kb on - strand at 380.352 kb on + strand at 380.353 kb on - strand at 380.353 kb on - strand at 380.358 kb on + strand at 380.359 kb on - strand at 380.370 kb on + strand at 380.371 kb on - strand at 380.371 kb on - strand at 380.452 kb on + strand, within Sama_0315 at 380.452 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.511 kb on + strand, within Sama_0315 at 380.512 kb on - strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.633 kb on - strand, within Sama_0315 at 380.685 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.830 kb on + strand, within Sama_0315 at 380.879 kb on + strand, within Sama_0315 at 380.879 kb on + strand, within Sama_0315 at 380.880 kb on - strand, within Sama_0315 at 380.880 kb on - strand, within Sama_0315 at 380.918 kb on + strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.998 kb on + strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 381.011 kb on + strand at 381.011 kb on + strand at 381.011 kb on + strand at 381.012 kb on - strand at 381.012 kb on - strand at 381.012 kb on - strand at 381.018 kb on - strand at 381.018 kb on - strand at 381.018 kb on - strand at 381.021 kb on + strand at 381.021 kb on + strand at 381.022 kb on - strand at 381.022 kb on - strand at 381.035 kb on + strand at 381.036 kb on - strand at 381.110 kb on - strand at 381.141 kb on - strand at 381.152 kb on + strand at 381.153 kb on - strand at 381.153 kb on - strand at 381.241 kb on - strand, within Sama_0316 at 381.245 kb on + strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.378 kb on + strand, within Sama_0316 at 381.379 kb on - strand, within Sama_0316 at 381.446 kb on + strand, within Sama_0316 at 381.450 kb on + strand, within Sama_0316 at 381.451 kb on - strand, within Sama_0316 at 381.451 kb on - strand, within Sama_0316 at 381.517 kb on - strand, within Sama_0316 at 381.520 kb on - strand, within Sama_0316 at 381.675 kb on - strand, within Sama_0316 at 381.682 kb on - strand, within Sama_0316 at 381.682 kb on - strand, within Sama_0316 at 381.749 kb on + strand, within Sama_0316 at 381.749 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.755 kb on + strand, within Sama_0316 at 381.909 kb on - strand at 381.961 kb on + strand at 381.972 kb on + strand at 381.973 kb on - strand at 381.973 kb on - strand at 381.980 kb on - strand at 381.980 kb on - strand at 381.980 kb on - strand at 381.987 kb on + strand at 381.988 kb on - strand at 382.196 kb on + strand at 382.196 kb on + strand at 382.207 kb on + strand at 382.207 kb on + strand at 382.207 kb on + strand at 382.208 kb on - strand at 382.208 kb on - strand at 382.208 kb on - strand at 382.208 kb on - strand at 382.212 kb on + strand at 382.212 kb on + strand at 382.227 kb on + strand at 382.227 kb on + strand at 382.227 kb on + strand at 382.232 kb on - strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.262 kb on - strand at 382.262 kb on - strand at 382.262 kb on - strand at 382.303 kb on + strand at 382.303 kb on + strand at 382.303 kb on + strand at 382.304 kb on - strand at 382.304 kb on - strand at 382.304 kb on - strand at 382.353 kb on + strand at 382.354 kb on - strand at 382.385 kb on - strand at 382.423 kb on - strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.562 kb on + strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.615 kb on + strand at 382.616 kb on - strand at 382.626 kb on + strand at 382.626 kb on + strand at 382.626 kb on + strand at 382.629 kb on + strand at 382.630 kb on - strand at 382.648 kb on + strand at 382.648 kb on + strand at 382.649 kb on - strand at 382.652 kb on + strand at 382.721 kb on + strand at 382.721 kb on + strand at 382.721 kb on + strand at 382.721 kb on - strand at 382.721 kb on + strand at 382.722 kb on - strand at 382.732 kb on + strand at 382.741 kb on + strand at 382.741 kb on + strand at 382.742 kb on - strand at 382.780 kb on + strand at 382.833 kb on + strand at 382.833 kb on + strand at 382.834 kb on - strand at 382.834 kb on - strand at 382.834 kb on - strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.853 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.873 kb on - strand at 382.920 kb on + strand at 382.920 kb on + strand at 382.921 kb on - strand at 382.921 kb on - strand at 382.921 kb on - strand at 382.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymidine remove 380,120 - -0.5 380,123 - -1.3 380,141 + -0.3 380,142 - +0.7 380,142 - -0.5 380,190 + +1.2 380,193 + -0.3 380,193 + -0.6 380,233 + -1.2 380,234 - -0.7 380,242 + +2.4 380,309 + +0.3 380,310 - -0.1 380,343 - +0.1 380,352 + +0.1 380,353 - +0.7 380,353 - +1.7 380,358 + +0.7 380,359 - -0.3 380,370 + -1.2 380,371 - -0.1 380,371 - -1.5 380,452 + Sama_0315 0.12 -0.3 380,452 + Sama_0315 0.12 +0.5 380,500 + Sama_0315 0.20 +0.4 380,500 + Sama_0315 0.20 -2.3 380,500 + Sama_0315 0.20 -0.1 380,500 + Sama_0315 0.20 +0.8 380,500 + Sama_0315 0.20 +0.7 380,500 + Sama_0315 0.20 -1.7 380,511 + Sama_0315 0.22 +0.7 380,512 - Sama_0315 0.22 +0.1 380,543 + Sama_0315 0.27 +0.5 380,543 + Sama_0315 0.27 +1.2 380,629 - Sama_0315 0.42 -0.3 380,629 - Sama_0315 0.42 -1.0 380,629 - Sama_0315 0.42 -2.2 380,629 - Sama_0315 0.42 +0.1 380,633 - Sama_0315 0.42 -1.6 380,685 + Sama_0315 0.51 +0.1 380,776 + Sama_0315 0.66 -0.6 380,776 + Sama_0315 0.66 -0.3 380,797 + Sama_0315 0.70 +0.4 380,797 + Sama_0315 0.70 -1.5 380,803 + Sama_0315 0.71 -0.8 380,803 + Sama_0315 0.71 +0.5 380,804 - Sama_0315 0.71 -1.2 380,804 - Sama_0315 0.71 +0.9 380,804 - Sama_0315 0.71 +0.6 380,804 - Sama_0315 0.71 +0.5 380,830 + Sama_0315 0.76 -0.7 380,879 + Sama_0315 0.84 -0.8 380,879 + Sama_0315 0.84 +0.7 380,880 - Sama_0315 0.84 -0.7 380,880 - Sama_0315 0.84 +0.1 380,918 + -0.5 380,955 - -0.5 380,955 - -0.3 380,955 - -0.1 380,955 - -0.1 380,955 - -0.2 380,955 - -0.9 380,955 - +0.5 380,955 - +0.7 380,998 + -0.7 380,999 - -0.3 380,999 - +0.4 380,999 - -2.3 380,999 - -0.6 380,999 - +0.9 381,011 + -0.2 381,011 + -1.1 381,011 + -0.3 381,012 - -1.4 381,012 - +1.3 381,012 - -0.9 381,018 - +0.8 381,018 - +0.2 381,018 - +1.2 381,021 + +0.5 381,021 + -0.2 381,022 - +0.7 381,022 - +0.1 381,035 + +0.3 381,036 - -1.3 381,110 - +0.1 381,141 - +0.4 381,152 + +0.2 381,153 - -1.2 381,153 - +0.8 381,241 - Sama_0316 0.16 -1.0 381,245 + Sama_0316 0.17 +0.1 381,272 - Sama_0316 0.20 +0.7 381,272 - Sama_0316 0.20 -0.0 381,272 - Sama_0316 0.20 +0.2 381,272 - Sama_0316 0.20 +0.1 381,272 - Sama_0316 0.20 +0.8 381,378 + Sama_0316 0.33 +0.5 381,379 - Sama_0316 0.33 +0.7 381,446 + Sama_0316 0.41 -0.2 381,450 + Sama_0316 0.41 -1.9 381,451 - Sama_0316 0.41 -0.3 381,451 - Sama_0316 0.41 -0.2 381,517 - Sama_0316 0.49 -0.3 381,520 - Sama_0316 0.50 +0.5 381,675 - Sama_0316 0.68 +2.4 381,682 - Sama_0316 0.69 -0.4 381,682 - Sama_0316 0.69 +0.3 381,749 + Sama_0316 0.77 -0.9 381,749 + Sama_0316 0.77 +0.3 381,752 + Sama_0316 0.78 -1.6 381,752 + Sama_0316 0.78 +0.4 381,752 + Sama_0316 0.78 +1.2 381,753 - Sama_0316 0.78 -1.5 381,753 - Sama_0316 0.78 -0.3 381,753 - Sama_0316 0.78 -0.7 381,755 + Sama_0316 0.78 +0.6 381,909 - -0.2 381,961 + -0.2 381,972 + +1.0 381,973 - +0.1 381,973 - +0.4 381,980 - +0.4 381,980 - +0.5 381,980 - +2.5 381,987 + +0.7 381,988 - -0.6 382,196 + +0.7 382,196 + -0.5 382,207 + +0.7 382,207 + -0.1 382,207 + -0.6 382,208 - +0.1 382,208 - -0.7 382,208 - -0.1 382,208 - +0.3 382,212 + -0.6 382,212 + +0.2 382,227 + -1.3 382,227 + +0.5 382,227 + +1.7 382,232 - +0.2 382,258 + -0.7 382,258 + +1.3 382,258 + -0.7 382,258 + -1.0 382,258 + -0.2 382,258 + +0.5 382,259 - +0.1 382,259 - -0.2 382,259 - +1.2 382,259 - -0.5 382,259 - -0.1 382,262 - +2.0 382,262 - -1.0 382,262 - -0.1 382,303 + -1.5 382,303 + +0.3 382,303 + -0.3 382,304 - +1.3 382,304 - +2.7 382,304 - -0.1 382,353 + +1.1 382,354 - -0.4 382,385 - -1.1 382,423 - -0.5 382,538 + +0.1 382,538 + +0.6 382,538 + -0.2 382,538 + +2.7 382,538 + -1.5 382,539 - +0.9 382,539 - +0.1 382,539 - -0.6 382,539 - +0.1 382,539 - -0.2 382,539 - +0.1 382,539 - +1.1 382,539 - +1.3 382,539 - -1.3 382,539 - +0.4 382,562 + -0.5 382,563 - +0.4 382,563 - -1.2 382,563 - +0.3 382,563 - -0.5 382,563 - -1.5 382,615 + +0.3 382,616 - -0.6 382,626 + +0.2 382,626 + -1.9 382,626 + -1.3 382,629 + +0.3 382,630 - -0.7 382,648 + -1.9 382,648 + +0.3 382,649 - +0.3 382,652 + -0.4 382,721 + -0.9 382,721 + -0.9 382,721 + +0.2 382,721 - -1.4 382,721 + -0.7 382,722 - -0.1 382,732 + -0.5 382,741 + -0.3 382,741 + +0.1 382,742 - -1.2 382,780 + +0.4 382,833 + +0.7 382,833 + +0.3 382,834 - -1.3 382,834 - +0.0 382,834 - -0.3 382,837 + -0.3 382,837 + +0.2 382,837 + +0.5 382,837 + -0.3 382,837 + +0.3 382,837 + -1.0 382,837 + +1.0 382,838 - +0.2 382,838 - -0.7 382,838 - -0.8 382,838 - -0.2 382,838 - -0.2 382,853 + -1.7 382,863 + -0.5 382,863 + +1.2 382,863 + +1.5 382,863 + +0.6 382,863 + +0.5 382,863 + +1.2 382,863 + +0.5 382,863 + +1.3 382,863 + +0.4 382,863 + +0.7 382,863 + +0.0 382,863 + +0.9 382,864 - +0.2 382,864 - +0.4 382,864 - -0.6 382,864 - +0.5 382,864 - +0.1 382,873 - -0.7 382,920 + +1.5 382,920 + -1.3 382,921 - -0.2 382,921 - -0.4 382,921 - -0.1 382,924 - +0.9
Or see this region's nucleotide sequence