Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0815 and Psest_0816 are separated by 69 nucleotides Psest_0816 and Psest_0817 are separated by 49 nucleotides Psest_0817 and Psest_0818 are separated by 24 nucleotides
Psest_0815: Psest_0815 - Cytochrome c, mono- and diheme variants, at 889,993 to 891,675
_0815
Psest_0816: Psest_0816 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family, at 891,745 to 892,350
_0816
Psest_0817: Psest_0817 - Ethylbenzene dehydrogenase., at 892,400 to 893,275
_0817
Psest_0818: Psest_0818 - hypothetical protein, at 893,300 to 893,446
_0818
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 890.758 kb on + strand, within Psest_0815 at 890.758 kb on + strand, within Psest_0815 at 890.758 kb on + strand, within Psest_0815 at 890.758 kb on + strand, within Psest_0815 at 890.759 kb on - strand, within Psest_0815 at 890.848 kb on + strand, within Psest_0815 at 890.849 kb on - strand, within Psest_0815 at 890.849 kb on - strand, within Psest_0815 at 890.947 kb on + strand, within Psest_0815 at 890.947 kb on + strand, within Psest_0815 at 890.948 kb on - strand, within Psest_0815 at 890.948 kb on - strand, within Psest_0815 at 890.992 kb on - strand, within Psest_0815 at 891.019 kb on + strand, within Psest_0815 at 891.020 kb on - strand, within Psest_0815 at 891.032 kb on - strand, within Psest_0815 at 891.032 kb on - strand, within Psest_0815 at 891.242 kb on - strand, within Psest_0815 at 891.250 kb on + strand, within Psest_0815 at 891.250 kb on + strand, within Psest_0815 at 891.250 kb on + strand, within Psest_0815 at 891.250 kb on + strand, within Psest_0815 at 891.251 kb on - strand, within Psest_0815 at 891.391 kb on + strand, within Psest_0815 at 891.391 kb on + strand, within Psest_0815 at 891.392 kb on - strand, within Psest_0815 at 891.392 kb on - strand, within Psest_0815 at 891.571 kb on + strand at 891.572 kb on - strand at 891.661 kb on + strand at 891.661 kb on + strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.662 kb on - strand at 891.671 kb on - strand at 891.673 kb on + strand at 891.674 kb on - strand at 891.697 kb on - strand at 891.959 kb on - strand, within Psest_0816 at 891.959 kb on - strand, within Psest_0816 at 892.326 kb on + strand at 892.327 kb on - strand at 892.327 kb on - strand at 892.327 kb on - strand at 892.327 kb on - strand at 892.353 kb on + strand at 892.354 kb on - strand at 892.462 kb on + strand at 892.743 kb on - strand, within Psest_0817 at 892.743 kb on - strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.820 kb on + strand, within Psest_0817 at 892.821 kb on - strand, within Psest_0817 at 892.821 kb on - strand, within Psest_0817 at 892.821 kb on - strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.931 kb on + strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.932 kb on - strand, within Psest_0817 at 892.964 kb on + strand, within Psest_0817 at 892.964 kb on + strand, within Psest_0817 at 892.965 kb on - strand, within Psest_0817 at 892.965 kb on - strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.967 kb on + strand, within Psest_0817 at 892.968 kb on - strand, within Psest_0817 at 892.968 kb on - strand, within Psest_0817 at 893.086 kb on + strand, within Psest_0817 at 893.086 kb on + strand, within Psest_0817 at 893.087 kb on - strand, within Psest_0817 at 893.087 kb on - strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817 at 893.159 kb on + strand, within Psest_0817
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 890,758 + Psest_0815 0.45 -0.6 890,758 + Psest_0815 0.45 -1.2 890,758 + Psest_0815 0.45 -1.2 890,758 + Psest_0815 0.45 +1.3 890,759 - Psest_0815 0.46 -2.2 890,848 + Psest_0815 0.51 +0.1 890,849 - Psest_0815 0.51 +0.2 890,849 - Psest_0815 0.51 -0.5 890,947 + Psest_0815 0.57 -0.5 890,947 + Psest_0815 0.57 -0.3 890,948 - Psest_0815 0.57 -0.4 890,948 - Psest_0815 0.57 -0.3 890,992 - Psest_0815 0.59 -1.5 891,019 + Psest_0815 0.61 +0.1 891,020 - Psest_0815 0.61 +1.3 891,032 - Psest_0815 0.62 -0.3 891,032 - Psest_0815 0.62 +0.3 891,242 - Psest_0815 0.74 +0.9 891,250 + Psest_0815 0.75 +1.3 891,250 + Psest_0815 0.75 +0.1 891,250 + Psest_0815 0.75 -1.3 891,250 + Psest_0815 0.75 +1.2 891,251 - Psest_0815 0.75 +0.5 891,391 + Psest_0815 0.83 -0.7 891,391 + Psest_0815 0.83 -0.5 891,392 - Psest_0815 0.83 -2.0 891,392 - Psest_0815 0.83 -0.1 891,571 + -0.3 891,572 - +0.8 891,661 + +0.7 891,661 + +0.9 891,662 - +0.3 891,662 - -0.1 891,662 - +0.7 891,662 - +0.4 891,662 - +0.6 891,662 - +2.1 891,671 - +1.6 891,673 + +1.8 891,674 - +0.9 891,697 - +0.5 891,959 - Psest_0816 0.35 +0.3 891,959 - Psest_0816 0.35 +0.6 892,326 + +1.1 892,327 - -0.6 892,327 - -0.2 892,327 - -0.4 892,327 - -0.3 892,353 + +0.6 892,354 - +0.4 892,462 + +0.7 892,743 - Psest_0817 0.39 -2.7 892,743 - Psest_0817 0.39 -0.1 892,820 + Psest_0817 0.48 +1.8 892,820 + Psest_0817 0.48 +0.7 892,820 + Psest_0817 0.48 -0.1 892,820 + Psest_0817 0.48 +0.7 892,820 + Psest_0817 0.48 +0.0 892,820 + Psest_0817 0.48 +2.1 892,821 - Psest_0817 0.48 -0.2 892,821 - Psest_0817 0.48 +0.0 892,821 - Psest_0817 0.48 +0.9 892,931 + Psest_0817 0.61 +0.5 892,931 + Psest_0817 0.61 -0.3 892,931 + Psest_0817 0.61 +1.7 892,931 + Psest_0817 0.61 +0.6 892,931 + Psest_0817 0.61 +0.7 892,932 - Psest_0817 0.61 -3.3 892,932 - Psest_0817 0.61 -0.3 892,932 - Psest_0817 0.61 +0.1 892,932 - Psest_0817 0.61 -1.2 892,964 + Psest_0817 0.64 +0.3 892,964 + Psest_0817 0.64 +2.5 892,965 - Psest_0817 0.64 -0.7 892,965 - Psest_0817 0.64 +0.1 892,967 + Psest_0817 0.65 +0.1 892,967 + Psest_0817 0.65 +0.5 892,967 + Psest_0817 0.65 +1.3 892,968 - Psest_0817 0.65 -0.0 892,968 - Psest_0817 0.65 -1.8 893,086 + Psest_0817 0.78 +0.0 893,086 + Psest_0817 0.78 -1.3 893,087 - Psest_0817 0.78 +0.1 893,087 - Psest_0817 0.78 -0.2 893,159 + Psest_0817 0.87 +0.3 893,159 + Psest_0817 0.87 +0.7 893,159 + Psest_0817 0.87 -0.1
Or see this region's nucleotide sequence