Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4083

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4081 and Psest_4082 are separated by 64 nucleotidesPsest_4082 and Psest_4083 are separated by 1 nucleotidesPsest_4083 and Psest_4084 are separated by 196 nucleotides Psest_4081: Psest_4081 - Glutaminase (EC 3.5.1.2) (from data), at 4,256,772 to 4,257,680 _4081 Psest_4082: Psest_4082 - hypothetical protein, at 4,257,745 to 4,258,047 _4082 Psest_4083: Psest_4083 - Predicted permease, at 4,258,049 to 4,258,990 _4083 Psest_4084: Psest_4084 - oxaloacetate decarboxylase alpha subunit, at 4,259,187 to 4,260,995 _4084 Position (kb) 4258 4259Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4257.124 kb on + strand, within Psest_4081at 4257.124 kb on + strand, within Psest_4081at 4257.124 kb on + strand, within Psest_4081at 4257.124 kb on + strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.181 kb on + strand, within Psest_4081at 4257.181 kb on + strand, within Psest_4081at 4257.181 kb on + strand, within Psest_4081at 4257.182 kb on - strand, within Psest_4081at 4257.215 kb on - strand, within Psest_4081at 4257.610 kb on + strandat 4257.610 kb on + strandat 4257.611 kb on - strandat 4257.611 kb on - strandat 4257.611 kb on - strandat 4257.786 kb on - strand, within Psest_4082at 4257.786 kb on - strand, within Psest_4082at 4257.809 kb on + strand, within Psest_4082at 4257.809 kb on + strand, within Psest_4082at 4257.810 kb on - strand, within Psest_4082at 4257.812 kb on + strand, within Psest_4082at 4257.813 kb on - strand, within Psest_4082at 4258.090 kb on - strandat 4258.206 kb on + strand, within Psest_4083at 4258.206 kb on + strand, within Psest_4083at 4258.206 kb on + strand, within Psest_4083at 4258.428 kb on + strand, within Psest_4083at 4258.429 kb on - strand, within Psest_4083at 4258.429 kb on - strand, within Psest_4083at 4258.627 kb on + strand, within Psest_4083at 4258.627 kb on + strand, within Psest_4083at 4258.627 kb on + strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.684 kb on + strand, within Psest_4083at 4258.704 kb on + strand, within Psest_4083at 4258.704 kb on + strand, within Psest_4083at 4258.705 kb on - strand, within Psest_4083at 4258.705 kb on - strand, within Psest_4083at 4258.889 kb on - strand, within Psest_4083at 4258.903 kb on - strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.992 kb on + strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4258.993 kb on - strandat 4259.031 kb on - strandat 4259.203 kb on - strandat 4259.497 kb on + strand, within Psest_4084at 4259.497 kb on + strand, within Psest_4084at 4259.497 kb on + strand, within Psest_4084at 4259.497 kb on + strand, within Psest_4084at 4259.498 kb on - strand, within Psest_4084at 4259.498 kb on - strandat 4259.551 kb on + strand, within Psest_4084at 4259.551 kb on + strand, within Psest_4084at 4259.707 kb on + strand, within Psest_4084at 4259.708 kb on - strand, within Psest_4084at 4259.708 kb on - strand, within Psest_4084at 4259.708 kb on - strand, within Psest_4084at 4259.715 kb on + strand, within Psest_4084at 4259.715 kb on + strand, within Psest_4084at 4259.716 kb on - strand, within Psest_4084at 4259.716 kb on - strand, within Psest_4084at 4259.716 kb on - strand, within Psest_4084at 4259.716 kb on - strand, within Psest_4084at 4259.884 kb on + strand, within Psest_4084at 4259.884 kb on + strand, within Psest_4084at 4259.884 kb on + strand, within Psest_4084at 4259.884 kb on + strand, within Psest_4084at 4259.884 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.887 kb on + strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.888 kb on - strand, within Psest_4084at 4259.915 kb on - strand, within Psest_4084

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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4,257,124 + Psest_4081 0.39 +1.1
4,257,124 + Psest_4081 0.39 +1.2
4,257,124 + Psest_4081 0.39 +0.4
4,257,124 + Psest_4081 0.39 +0.5
4,257,125 - Psest_4081 0.39 +0.1
4,257,125 - Psest_4081 0.39 +0.2
4,257,125 - Psest_4081 0.39 -0.5
4,257,125 - Psest_4081 0.39 -0.2
4,257,181 + Psest_4081 0.45 -0.2
4,257,181 + Psest_4081 0.45 +0.1
4,257,181 + Psest_4081 0.45 -0.8
4,257,182 - Psest_4081 0.45 -0.6
4,257,215 - Psest_4081 0.49 -0.2
4,257,610 + +1.2
4,257,610 + +1.2
4,257,611 - -3.1
4,257,611 - +1.0
4,257,611 - +1.1
4,257,786 - Psest_4082 0.14 +1.2
4,257,786 - Psest_4082 0.14 +2.1
4,257,809 + Psest_4082 0.21 +1.7
4,257,809 + Psest_4082 0.21 +1.0
4,257,810 - Psest_4082 0.21 +2.1
4,257,812 + Psest_4082 0.22 +1.5
4,257,813 - Psest_4082 0.22 +0.9
4,258,090 - -3.0
4,258,206 + Psest_4083 0.17 -3.2
4,258,206 + Psest_4083 0.17 -2.2
4,258,206 + Psest_4083 0.17 -2.8
4,258,428 + Psest_4083 0.40 -1.0
4,258,429 - Psest_4083 0.40 -5.2
4,258,429 - Psest_4083 0.40 -4.1
4,258,627 + Psest_4083 0.61 -2.9
4,258,627 + Psest_4083 0.61 -2.2
4,258,627 + Psest_4083 0.61 -3.0
4,258,628 - Psest_4083 0.61 -1.7
4,258,628 - Psest_4083 0.61 -2.9
4,258,628 - Psest_4083 0.61 -2.6
4,258,628 - Psest_4083 0.61 -2.4
4,258,628 - Psest_4083 0.61 -2.6
4,258,628 - Psest_4083 0.61 -1.5
4,258,628 - Psest_4083 0.61 -1.3
4,258,629 + Psest_4083 0.62 -3.6
4,258,629 + Psest_4083 0.62 -2.8
4,258,629 + Psest_4083 0.62 -3.9
4,258,629 + Psest_4083 0.62 -4.0
4,258,629 + Psest_4083 0.62 -2.0
4,258,629 + Psest_4083 0.62 -3.1
4,258,629 + Psest_4083 0.62 -1.0
4,258,629 + Psest_4083 0.62 -3.1
4,258,629 + Psest_4083 0.62 -0.7
4,258,629 + Psest_4083 0.62 -3.0
4,258,629 + Psest_4083 0.62 -3.5
4,258,629 + Psest_4083 0.62 -2.8
4,258,629 + Psest_4083 0.62 -3.4
4,258,629 + Psest_4083 0.62 -5.0
4,258,629 + Psest_4083 0.62 -3.4
4,258,629 + Psest_4083 0.62 -3.2
4,258,629 + Psest_4083 0.62 -3.8
4,258,629 + Psest_4083 0.62 -3.0
4,258,629 + Psest_4083 0.62 -4.6
4,258,629 + Psest_4083 0.62 -4.7
4,258,629 + Psest_4083 0.62 -1.7
4,258,629 + Psest_4083 0.62 -2.0
4,258,629 + Psest_4083 0.62 -3.7
4,258,629 + Psest_4083 0.62 -3.6
4,258,629 + Psest_4083 0.62 -2.8
4,258,629 + Psest_4083 0.62 -4.4
4,258,629 + Psest_4083 0.62 -4.3
4,258,629 + Psest_4083 0.62 -3.2
4,258,629 + Psest_4083 0.62 -0.6
4,258,629 + Psest_4083 0.62 -1.5
4,258,629 + Psest_4083 0.62 -1.7
4,258,629 + Psest_4083 0.62 -1.5
4,258,629 + Psest_4083 0.62 -3.4
4,258,629 + Psest_4083 0.62 -2.0
4,258,629 + Psest_4083 0.62 -3.6
4,258,629 + Psest_4083 0.62 -2.7
4,258,629 + Psest_4083 0.62 -3.0
4,258,629 + Psest_4083 0.62 -4.7
4,258,629 + Psest_4083 0.62 -2.9
4,258,629 + Psest_4083 0.62 -2.3
4,258,629 + Psest_4083 0.62 -3.0
4,258,629 + Psest_4083 0.62 -3.9
4,258,629 + Psest_4083 0.62 -3.5
4,258,629 + Psest_4083 0.62 -2.6
4,258,630 - Psest_4083 0.62 -3.5
4,258,630 - Psest_4083 0.62 -2.8
4,258,630 - Psest_4083 0.62 -3.5
4,258,630 - Psest_4083 0.62 -3.4
4,258,630 - Psest_4083 0.62 -1.2
4,258,630 - Psest_4083 0.62 -3.4
4,258,630 - Psest_4083 0.62 -1.3
4,258,630 - Psest_4083 0.62 -2.4
4,258,630 - Psest_4083 0.62 -2.0
4,258,630 - Psest_4083 0.62 -1.7
4,258,630 - Psest_4083 0.62 -2.5
4,258,630 - Psest_4083 0.62 -2.3
4,258,630 - Psest_4083 0.62 -2.2
4,258,630 - Psest_4083 0.62 -4.3
4,258,630 - Psest_4083 0.62 -1.3
4,258,630 - Psest_4083 0.62 -3.4
4,258,630 - Psest_4083 0.62 -3.1
4,258,630 - Psest_4083 0.62 -5.2
4,258,630 - Psest_4083 0.62 -3.6
4,258,630 - Psest_4083 0.62 -4.9
4,258,630 - Psest_4083 0.62 -3.1
4,258,630 - Psest_4083 0.62 -3.2
4,258,630 - Psest_4083 0.62 -4.5
4,258,630 - Psest_4083 0.62 -3.7
4,258,630 - Psest_4083 0.62 -1.8
4,258,630 - Psest_4083 0.62 -3.1
4,258,630 - Psest_4083 0.62 -3.5
4,258,630 - Psest_4083 0.62 -3.2
4,258,630 - Psest_4083 0.62 -4.2
4,258,630 - Psest_4083 0.62 -1.7
4,258,630 - Psest_4083 0.62 -2.7
4,258,630 - Psest_4083 0.62 -2.5
4,258,630 - Psest_4083 0.62 -3.5
4,258,630 - Psest_4083 0.62 -3.8
4,258,630 - Psest_4083 0.62 -3.7
4,258,662 + Psest_4083 0.65 -2.6
4,258,662 + Psest_4083 0.65 -1.5
4,258,662 + Psest_4083 0.65 -2.3
4,258,662 + Psest_4083 0.65 -2.3
4,258,662 + Psest_4083 0.65 -4.4
4,258,684 + Psest_4083 0.67 -3.8
4,258,704 + Psest_4083 0.70 -4.6
4,258,704 + Psest_4083 0.70 -2.5
4,258,705 - Psest_4083 0.70 -3.4
4,258,705 - Psest_4083 0.70 -3.3
4,258,889 - Psest_4083 0.89 -2.7
4,258,903 - -3.2
4,258,992 + -3.0
4,258,992 + -2.7
4,258,992 + -3.9
4,258,992 + -2.4
4,258,992 + -4.4
4,258,992 + -2.7
4,258,992 + -2.0
4,258,992 + -3.2
4,258,992 + -4.5
4,258,992 + -0.7
4,258,992 + -5.0
4,258,992 + -3.2
4,258,992 + -1.0
4,258,992 + -3.2
4,258,992 + -4.1
4,258,992 + -2.4
4,258,992 + -2.3
4,258,992 + -2.3
4,258,992 + -1.0
4,258,992 + -5.1
4,258,992 + -5.4
4,258,992 + -3.6
4,258,992 + -1.3
4,258,992 + -3.9
4,258,992 + -4.2
4,258,993 - -3.6
4,258,993 - -3.9
4,258,993 - -1.9
4,258,993 - -4.0
4,258,993 - -1.7
4,258,993 - -2.4
4,258,993 - -0.7
4,258,993 - -3.4
4,258,993 - -1.7
4,258,993 - -0.7
4,258,993 - -3.7
4,258,993 - -3.0
4,258,993 - -3.7
4,258,993 - -5.2
4,258,993 - -4.4
4,258,993 - -0.3
4,259,031 - -0.2
4,259,203 - -1.9
4,259,497 + Psest_4084 0.17 -1.0
4,259,497 + Psest_4084 0.17 -2.2
4,259,497 + Psest_4084 0.17 -1.9
4,259,497 + Psest_4084 0.17 -1.0
4,259,498 - Psest_4084 0.17 -1.0
4,259,498 - -1.3
4,259,551 + Psest_4084 0.20 -2.8
4,259,551 + Psest_4084 0.20 -3.5
4,259,707 + Psest_4084 0.29 -3.8
4,259,708 - Psest_4084 0.29 -3.4
4,259,708 - Psest_4084 0.29 -1.6
4,259,708 - Psest_4084 0.29 -2.4
4,259,715 + Psest_4084 0.29 -2.9
4,259,715 + Psest_4084 0.29 -1.9
4,259,716 - Psest_4084 0.29 -2.9
4,259,716 - Psest_4084 0.29 -2.0
4,259,716 - Psest_4084 0.29 -1.5
4,259,716 - Psest_4084 0.29 -2.2
4,259,884 + Psest_4084 0.39 -3.0
4,259,884 + Psest_4084 0.39 -2.3
4,259,884 + Psest_4084 0.39 -2.5
4,259,884 + Psest_4084 0.39 -2.4
4,259,884 + Psest_4084 0.39 -1.5
4,259,887 + Psest_4084 0.39 -0.7
4,259,887 + Psest_4084 0.39 -2.6
4,259,887 + Psest_4084 0.39 -3.0
4,259,887 + Psest_4084 0.39 -2.2
4,259,887 + Psest_4084 0.39 -3.1
4,259,887 + Psest_4084 0.39 +1.3
4,259,887 + Psest_4084 0.39 -2.3
4,259,887 + Psest_4084 0.39 -3.6
4,259,887 + Psest_4084 0.39 -3.8
4,259,888 - Psest_4084 0.39 -2.5
4,259,888 - Psest_4084 0.39 -3.0
4,259,888 - Psest_4084 0.39 -1.6
4,259,888 - Psest_4084 0.39 -1.7
4,259,888 - Psest_4084 0.39 -2.1
4,259,888 - Psest_4084 0.39 -2.3
4,259,888 - Psest_4084 0.39 -3.2
4,259,888 - Psest_4084 0.39 -1.7
4,259,888 - Psest_4084 0.39 -0.7
4,259,915 - Psest_4084 0.40 -2.3

Or see this region's nucleotide sequence