Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3714 and HP15_3715 are separated by 155 nucleotides HP15_3715 and HP15_3716 are separated by 18 nucleotides HP15_3716 and HP15_3717 are separated by 77 nucleotides HP15_3717 and HP15_3718 are separated by 83 nucleotides
HP15_3714: HP15_3714 - exodeoxyribonuclease V, gamma subunit, at 3,927,234 to 3,930,860
_3714
HP15_3715: HP15_3715 - short-chain dehydrogenase/reductase SDR, at 3,931,016 to 3,931,801
_3715
HP15_3716: HP15_3716 - conserved hypothetical protein, at 3,931,820 to 3,932,110
_3716
HP15_3717: HP15_3717 - conserved hypothetical protein, at 3,932,188 to 3,932,619
_3717
HP15_3718: HP15_3718 - conserved hypothetical protein, secreted, at 3,932,703 to 3,933,143
_3718
Position (kb)
3931
3932
3933 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3930.878 kb on + strand at 3930.883 kb on + strand at 3930.883 kb on + strand at 3930.922 kb on + strand at 3930.932 kb on + strand at 3931.065 kb on + strand at 3931.067 kb on - strand at 3931.087 kb on - strand at 3931.087 kb on - strand at 3931.087 kb on - strand at 3931.091 kb on + strand at 3931.099 kb on - strand, within HP15_3715 at 3931.137 kb on + strand, within HP15_3715 at 3931.187 kb on - strand, within HP15_3715 at 3931.193 kb on - strand, within HP15_3715 at 3931.270 kb on - strand, within HP15_3715 at 3931.272 kb on + strand, within HP15_3715 at 3931.277 kb on + strand, within HP15_3715 at 3931.285 kb on - strand, within HP15_3715 at 3931.308 kb on + strand, within HP15_3715 at 3931.308 kb on + strand, within HP15_3715 at 3931.316 kb on - strand, within HP15_3715 at 3931.341 kb on - strand, within HP15_3715 at 3931.441 kb on + strand, within HP15_3715 at 3931.503 kb on - strand, within HP15_3715 at 3931.525 kb on + strand, within HP15_3715 at 3931.534 kb on - strand, within HP15_3715 at 3931.573 kb on + strand, within HP15_3715 at 3931.587 kb on - strand, within HP15_3715 at 3931.625 kb on + strand, within HP15_3715 at 3931.688 kb on - strand, within HP15_3715 at 3931.748 kb on + strand at 3931.809 kb on - strand at 3931.878 kb on + strand, within HP15_3716 at 3931.886 kb on - strand, within HP15_3716 at 3931.989 kb on + strand, within HP15_3716 at 3932.030 kb on - strand, within HP15_3716 at 3932.134 kb on - strand at 3932.193 kb on - strand at 3932.195 kb on + strand at 3932.195 kb on + strand at 3932.212 kb on + strand at 3932.241 kb on - strand, within HP15_3717 at 3932.345 kb on - strand, within HP15_3717 at 3932.378 kb on + strand, within HP15_3717 at 3932.427 kb on + strand, within HP15_3717 at 3932.521 kb on + strand, within HP15_3717 at 3932.524 kb on - strand, within HP15_3717 at 3932.529 kb on - strand, within HP15_3717 at 3932.572 kb on - strand, within HP15_3717 at 3932.652 kb on + strand at 3932.652 kb on + strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.687 kb on + strand at 3932.772 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.876 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.897 kb on - strand, within HP15_3718 at 3932.919 kb on + strand, within HP15_3718 at 3932.927 kb on - strand, within HP15_3718 at 3932.963 kb on + strand, within HP15_3718 at 3932.983 kb on + strand, within HP15_3718 at 3933.016 kb on + strand, within HP15_3718 at 3933.083 kb on + strand, within HP15_3718
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 3,930,878 + -1.8 3,930,883 + +0.1 3,930,883 + -0.2 3,930,922 + -0.1 3,930,932 + -2.6 3,931,065 + +0.1 3,931,067 - -0.8 3,931,087 - +0.1 3,931,087 - +0.4 3,931,087 - +0.6 3,931,091 + -1.6 3,931,099 - HP15_3715 0.11 -0.1 3,931,137 + HP15_3715 0.15 +2.3 3,931,187 - HP15_3715 0.22 +1.0 3,931,193 - HP15_3715 0.23 -0.6 3,931,270 - HP15_3715 0.32 +0.1 3,931,272 + HP15_3715 0.33 +0.4 3,931,277 + HP15_3715 0.33 -0.4 3,931,285 - HP15_3715 0.34 +0.3 3,931,308 + HP15_3715 0.37 +1.3 3,931,308 + HP15_3715 0.37 +0.1 3,931,316 - HP15_3715 0.38 +0.5 3,931,341 - HP15_3715 0.41 -0.5 3,931,441 + HP15_3715 0.54 +1.1 3,931,503 - HP15_3715 0.62 -0.7 3,931,525 + HP15_3715 0.65 +0.9 3,931,534 - HP15_3715 0.66 -0.7 3,931,573 + HP15_3715 0.71 -0.2 3,931,587 - HP15_3715 0.73 +0.9 3,931,625 + HP15_3715 0.77 +0.5 3,931,688 - HP15_3715 0.85 -1.3 3,931,748 + +0.1 3,931,809 - +0.3 3,931,878 + HP15_3716 0.20 +0.5 3,931,886 - HP15_3716 0.23 +0.8 3,931,989 + HP15_3716 0.58 +1.1 3,932,030 - HP15_3716 0.72 +2.7 3,932,134 - +0.2 3,932,193 - +0.1 3,932,195 + -0.1 3,932,195 + +0.3 3,932,212 + -0.4 3,932,241 - HP15_3717 0.12 +0.9 3,932,345 - HP15_3717 0.36 -1.1 3,932,378 + HP15_3717 0.44 +1.5 3,932,427 + HP15_3717 0.55 +0.2 3,932,521 + HP15_3717 0.77 +0.4 3,932,524 - HP15_3717 0.78 +0.2 3,932,529 - HP15_3717 0.79 +0.1 3,932,572 - HP15_3717 0.89 +1.4 3,932,652 + +0.1 3,932,652 + +0.5 3,932,660 - -0.4 3,932,660 - -0.2 3,932,660 - -0.6 3,932,687 + -0.4 3,932,772 + HP15_3718 0.16 +1.0 3,932,824 + HP15_3718 0.27 -0.4 3,932,824 + HP15_3718 0.27 -0.5 3,932,832 - HP15_3718 0.29 +0.5 3,932,832 - HP15_3718 0.29 +0.2 3,932,868 + HP15_3718 0.37 -0.5 3,932,868 + HP15_3718 0.37 -0.1 3,932,873 + HP15_3718 0.39 +1.2 3,932,873 + HP15_3718 0.39 +0.4 3,932,876 - HP15_3718 0.39 -1.0 3,932,881 - HP15_3718 0.40 -0.3 3,932,881 - HP15_3718 0.40 +0.7 3,932,897 - HP15_3718 0.44 +0.1 3,932,919 + HP15_3718 0.49 +0.5 3,932,927 - HP15_3718 0.51 +1.1 3,932,963 + HP15_3718 0.59 -0.9 3,932,983 + HP15_3718 0.63 +0.1 3,933,016 + HP15_3718 0.71 +0.2 3,933,083 + HP15_3718 0.86 -1.1
Or see this region's nucleotide sequence