Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3312 and HP15_3313 are separated by 171 nucleotides HP15_3313 and HP15_3314 overlap by 27 nucleotides
HP15_3312: HP15_3312 - diguanylate cyclase/phosphodiesterase, at 3,468,721 to 3,472,482
_3312
HP15_3313: HP15_3313 - zinc protease protein, at 3,472,654 to 3,473,724
_3313
HP15_3314: HP15_3314 - N-acetyllutamate synthase, at 3,473,698 to 3,475,005
_3314
Position (kb) 3472
3473
3474 Strain fitness (log2 ratio) -1
0
1
2 at 3471.873 kb on - strand, within HP15_3312 at 3472.039 kb on - strand, within HP15_3312 at 3472.070 kb on + strand, within HP15_3312 at 3472.184 kb on + strand at 3472.301 kb on - strand at 3472.511 kb on - strand at 3472.513 kb on - strand at 3472.802 kb on + strand, within HP15_3313 at 3472.802 kb on + strand, within HP15_3313 at 3472.802 kb on + strand, within HP15_3313 at 3472.928 kb on + strand, within HP15_3313 at 3472.931 kb on - strand, within HP15_3313 at 3472.933 kb on + strand, within HP15_3313 at 3472.941 kb on + strand, within HP15_3313 at 3473.089 kb on - strand, within HP15_3313 at 3473.105 kb on + strand, within HP15_3313 at 3473.139 kb on - strand, within HP15_3313 at 3473.151 kb on - strand, within HP15_3313 at 3473.208 kb on + strand, within HP15_3313 at 3473.209 kb on - strand, within HP15_3313 at 3473.218 kb on + strand, within HP15_3313 at 3473.242 kb on + strand, within HP15_3313 at 3473.295 kb on + strand, within HP15_3313 at 3473.308 kb on - strand, within HP15_3313 at 3473.320 kb on + strand, within HP15_3313 at 3473.320 kb on + strand, within HP15_3313 at 3473.482 kb on - strand, within HP15_3313 at 3473.509 kb on - strand, within HP15_3313 at 3473.611 kb on + strand, within HP15_3313 at 3473.743 kb on - strand at 3473.751 kb on + strand at 3473.766 kb on + strand at 3473.767 kb on + strand at 3473.863 kb on - strand, within HP15_3314 at 3473.876 kb on - strand, within HP15_3314 at 3473.960 kb on + strand, within HP15_3314 at 3473.965 kb on + strand, within HP15_3314 at 3473.971 kb on - strand, within HP15_3314 at 3473.973 kb on + strand, within HP15_3314 at 3473.976 kb on - strand, within HP15_3314 at 3474.091 kb on - strand, within HP15_3314 at 3474.152 kb on + strand, within HP15_3314 at 3474.160 kb on - strand, within HP15_3314 at 3474.160 kb on - strand, within HP15_3314 at 3474.238 kb on + strand, within HP15_3314 at 3474.267 kb on - strand, within HP15_3314 at 3474.456 kb on + strand, within HP15_3314 at 3474.641 kb on - strand, within HP15_3314 at 3474.672 kb on - strand, within HP15_3314
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 3,471,873 - HP15_3312 0.84 -0.2 3,472,039 - HP15_3312 0.88 +0.1 3,472,070 + HP15_3312 0.89 -1.1 3,472,184 + +0.2 3,472,301 - -0.1 3,472,511 - +0.7 3,472,513 - -0.2 3,472,802 + HP15_3313 0.14 -0.3 3,472,802 + HP15_3313 0.14 +2.7 3,472,802 + HP15_3313 0.14 +0.9 3,472,928 + HP15_3313 0.26 +0.3 3,472,931 - HP15_3313 0.26 +0.1 3,472,933 + HP15_3313 0.26 +0.3 3,472,941 + HP15_3313 0.27 -1.1 3,473,089 - HP15_3313 0.41 -0.7 3,473,105 + HP15_3313 0.42 +0.5 3,473,139 - HP15_3313 0.45 +0.4 3,473,151 - HP15_3313 0.46 +0.9 3,473,208 + HP15_3313 0.52 +0.3 3,473,209 - HP15_3313 0.52 +0.3 3,473,218 + HP15_3313 0.53 +0.6 3,473,242 + HP15_3313 0.55 +0.5 3,473,295 + HP15_3313 0.60 +0.1 3,473,308 - HP15_3313 0.61 +0.6 3,473,320 + HP15_3313 0.62 +0.5 3,473,320 + HP15_3313 0.62 +1.0 3,473,482 - HP15_3313 0.77 +0.7 3,473,509 - HP15_3313 0.80 +0.1 3,473,611 + HP15_3313 0.89 -0.9 3,473,743 - +0.1 3,473,751 + -0.1 3,473,766 + +0.0 3,473,767 + +0.4 3,473,863 - HP15_3314 0.13 +0.8 3,473,876 - HP15_3314 0.14 -1.0 3,473,960 + HP15_3314 0.20 +0.5 3,473,965 + HP15_3314 0.20 -0.6 3,473,971 - HP15_3314 0.21 -0.8 3,473,973 + HP15_3314 0.21 +2.7 3,473,976 - HP15_3314 0.21 -0.2 3,474,091 - HP15_3314 0.30 +0.5 3,474,152 + HP15_3314 0.35 +0.3 3,474,160 - HP15_3314 0.35 -0.4 3,474,160 - HP15_3314 0.35 +0.4 3,474,238 + HP15_3314 0.41 -0.6 3,474,267 - HP15_3314 0.44 +0.2 3,474,456 + HP15_3314 0.58 +0.1 3,474,641 - HP15_3314 0.72 -1.6 3,474,672 - HP15_3314 0.74 -0.3
Or see this region's nucleotide sequence