Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0337

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0335 and Psest_0336 are separated by 177 nucleotidesPsest_0336 and Psest_0337 are separated by 92 nucleotidesPsest_0337 and Psest_0338 are separated by 219 nucleotides Psest_0335: Psest_0335 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 357,942 to 358,556 _0335 Psest_0336: Psest_0336 - Protein of unknown function (DUF3509)., at 358,734 to 359,012 _0336 Psest_0337: Psest_0337 - Regulator of cell morphogenesis and NO signaling, at 359,105 to 359,578 _0337 Psest_0338: Psest_0338 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 359,798 to 362,008 _0338 Position (kb) 359 360Strain fitness (log2 ratio) -2 -1 0 1 2 3at 358.156 kb on + strand, within Psest_0335at 358.312 kb on + strand, within Psest_0335at 358.312 kb on + strand, within Psest_0335at 358.312 kb on + strand, within Psest_0335at 358.428 kb on + strand, within Psest_0335at 358.429 kb on - strand, within Psest_0335at 358.430 kb on + strand, within Psest_0335at 358.430 kb on + strand, within Psest_0335at 358.430 kb on + strand, within Psest_0335at 358.430 kb on + strand, within Psest_0335at 358.430 kb on + strand, within Psest_0335at 358.430 kb on + strand, within Psest_0335at 358.431 kb on - strand, within Psest_0335at 358.431 kb on - strand, within Psest_0335at 358.431 kb on - strand, within Psest_0335at 358.431 kb on - strand, within Psest_0335at 358.449 kb on - strand, within Psest_0335at 358.449 kb on - strand, within Psest_0335at 358.488 kb on + strand, within Psest_0335at 358.488 kb on + strand, within Psest_0335at 358.488 kb on + strand, within Psest_0335at 358.488 kb on + strand, within Psest_0335at 358.488 kb on + strand, within Psest_0335at 358.488 kb on + strand, within Psest_0335at 358.488 kb on + strand, within Psest_0335at 358.489 kb on - strand, within Psest_0335at 358.489 kb on - strand, within Psest_0335at 358.489 kb on - strand, within Psest_0335at 358.717 kb on + strandat 358.717 kb on + strandat 358.718 kb on - strandat 358.718 kb on - strandat 358.718 kb on - strandat 358.718 kb on - strandat 358.757 kb on + strandat 358.994 kb on + strandat 358.995 kb on - strandat 358.995 kb on - strandat 358.998 kb on + strandat 358.998 kb on + strandat 358.998 kb on + strandat 358.999 kb on - strandat 358.999 kb on - strandat 358.999 kb on - strandat 358.999 kb on - strandat 358.999 kb on - strandat 358.999 kb on - strandat 358.999 kb on - strandat 359.005 kb on - strandat 359.201 kb on - strand, within Psest_0337at 359.237 kb on - strand, within Psest_0337at 359.276 kb on + strand, within Psest_0337at 359.276 kb on + strand, within Psest_0337at 359.276 kb on + strand, within Psest_0337at 359.276 kb on + strand, within Psest_0337at 359.276 kb on + strand, within Psest_0337at 359.276 kb on + strand, within Psest_0337at 359.277 kb on - strand, within Psest_0337at 359.277 kb on - strand, within Psest_0337at 359.312 kb on + strand, within Psest_0337at 359.312 kb on + strand, within Psest_0337at 359.313 kb on - strand, within Psest_0337at 359.313 kb on - strand, within Psest_0337at 359.313 kb on - strand, within Psest_0337at 359.313 kb on - strand, within Psest_0337at 359.602 kb on - strandat 359.602 kb on - strandat 359.602 kb on - strandat 359.603 kb on + strandat 359.745 kb on + strandat 359.745 kb on + strandat 359.745 kb on + strandat 359.746 kb on - strandat 359.746 kb on - strandat 359.766 kb on + strandat 359.766 kb on + strandat 359.767 kb on - strandat 359.871 kb on - strandat 359.961 kb on - strandat 360.047 kb on + strand, within Psest_0338at 360.047 kb on + strand, within Psest_0338at 360.047 kb on + strand, within Psest_0338at 360.048 kb on - strand, within Psest_0338at 360.048 kb on - strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.086 kb on + strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.087 kb on - strand, within Psest_0338at 360.149 kb on + strand, within Psest_0338at 360.149 kb on + strand, within Psest_0338at 360.170 kb on + strand, within Psest_0338at 360.170 kb on + strand, within Psest_0338at 360.224 kb on + strand, within Psest_0338at 360.278 kb on + strand, within Psest_0338at 360.278 kb on + strand, within Psest_0338at 360.278 kb on + strand, within Psest_0338at 360.278 kb on + strand, within Psest_0338at 360.279 kb on - strand, within Psest_0338at 360.279 kb on - strand, within Psest_0338at 360.355 kb on + strand, within Psest_0338at 360.548 kb on + strand, within Psest_0338at 360.549 kb on - strand, within Psest_0338at 360.575 kb on + strand, within Psest_0338at 360.575 kb on + strand, within Psest_0338at 360.575 kb on + strand, within Psest_0338at 360.576 kb on - strand, within Psest_0338at 360.576 kb on - strand, within Psest_0338at 360.576 kb on - strand, within Psest_0338at 360.576 kb on - strand, within Psest_0338at 360.576 kb on - strand, within Psest_0338at 360.576 kb on - strand, within Psest_0338

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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358,156 + Psest_0335 0.35 -0.8
358,312 + Psest_0335 0.60 +0.4
358,312 + Psest_0335 0.60 +0.4
358,312 + Psest_0335 0.60 +0.4
358,428 + Psest_0335 0.79 -0.1
358,429 - Psest_0335 0.79 +1.2
358,430 + Psest_0335 0.79 +0.8
358,430 + Psest_0335 0.79 -0.5
358,430 + Psest_0335 0.79 -0.3
358,430 + Psest_0335 0.79 -0.7
358,430 + Psest_0335 0.79 +0.2
358,430 + Psest_0335 0.79 +0.6
358,431 - Psest_0335 0.80 +1.7
358,431 - Psest_0335 0.80 +0.8
358,431 - Psest_0335 0.80 +1.8
358,431 - Psest_0335 0.80 +1.0
358,449 - Psest_0335 0.82 -0.1
358,449 - Psest_0335 0.82 +0.6
358,488 + Psest_0335 0.89 +0.3
358,488 + Psest_0335 0.89 +0.8
358,488 + Psest_0335 0.89 +0.6
358,488 + Psest_0335 0.89 +0.1
358,488 + Psest_0335 0.89 -0.4
358,488 + Psest_0335 0.89 +1.6
358,488 + Psest_0335 0.89 -1.6
358,489 - Psest_0335 0.89 +1.1
358,489 - Psest_0335 0.89 +2.1
358,489 - Psest_0335 0.89 +1.3
358,717 + -0.1
358,717 + -0.7
358,718 - +0.9
358,718 - +0.3
358,718 - +1.6
358,718 - +0.1
358,757 + +1.0
358,994 + -0.1
358,995 - +0.7
358,995 - +0.2
358,998 + +0.8
358,998 + +0.6
358,998 + +0.3
358,999 - +0.7
358,999 - +1.4
358,999 - -0.4
358,999 - +0.6
358,999 - +0.4
358,999 - +1.6
358,999 - +1.1
359,005 - +0.5
359,201 - Psest_0337 0.20 +0.3
359,237 - Psest_0337 0.28 +0.2
359,276 + Psest_0337 0.36 -0.1
359,276 + Psest_0337 0.36 +0.1
359,276 + Psest_0337 0.36 +0.1
359,276 + Psest_0337 0.36 +1.3
359,276 + Psest_0337 0.36 +0.6
359,276 + Psest_0337 0.36 +0.2
359,277 - Psest_0337 0.36 +0.2
359,277 - Psest_0337 0.36 +0.9
359,312 + Psest_0337 0.44 +2.9
359,312 + Psest_0337 0.44 -0.4
359,313 - Psest_0337 0.44 +2.7
359,313 - Psest_0337 0.44 +0.3
359,313 - Psest_0337 0.44 +0.3
359,313 - Psest_0337 0.44 +0.8
359,602 - +0.5
359,602 - +0.4
359,602 - +1.1
359,603 + +0.6
359,745 + +0.2
359,745 + +1.2
359,745 + -0.1
359,746 - +0.5
359,746 - +0.6
359,766 + +0.2
359,766 + +0.2
359,767 - -0.1
359,871 - -0.3
359,961 - -2.0
360,047 + Psest_0338 0.11 -0.1
360,047 + Psest_0338 0.11 -1.3
360,047 + Psest_0338 0.11 -0.3
360,048 - Psest_0338 0.11 +0.1
360,048 - Psest_0338 0.11 -0.2
360,086 + Psest_0338 0.13 +0.1
360,086 + Psest_0338 0.13 -0.3
360,086 + Psest_0338 0.13 -1.4
360,086 + Psest_0338 0.13 +0.3
360,086 + Psest_0338 0.13 -0.4
360,086 + Psest_0338 0.13 +0.4
360,086 + Psest_0338 0.13 +0.7
360,086 + Psest_0338 0.13 -0.2
360,086 + Psest_0338 0.13 +0.6
360,086 + Psest_0338 0.13 +0.4
360,087 - Psest_0338 0.13 +0.3
360,087 - Psest_0338 0.13 +0.1
360,087 - Psest_0338 0.13 -1.0
360,087 - Psest_0338 0.13 +0.4
360,087 - Psest_0338 0.13 -0.7
360,087 - Psest_0338 0.13 +0.1
360,087 - Psest_0338 0.13 -0.3
360,087 - Psest_0338 0.13 -0.1
360,149 + Psest_0338 0.16 -0.0
360,149 + Psest_0338 0.16 +0.3
360,170 + Psest_0338 0.17 -1.6
360,170 + Psest_0338 0.17 -0.2
360,224 + Psest_0338 0.19 -0.3
360,278 + Psest_0338 0.22 -1.0
360,278 + Psest_0338 0.22 +2.3
360,278 + Psest_0338 0.22 -0.6
360,278 + Psest_0338 0.22 -0.1
360,279 - Psest_0338 0.22 -0.7
360,279 - Psest_0338 0.22 +0.2
360,355 + Psest_0338 0.25 +0.9
360,548 + Psest_0338 0.34 +0.9
360,549 - Psest_0338 0.34 +0.2
360,575 + Psest_0338 0.35 +0.1
360,575 + Psest_0338 0.35 +0.2
360,575 + Psest_0338 0.35 +0.8
360,576 - Psest_0338 0.35 +0.1
360,576 - Psest_0338 0.35 +0.8
360,576 - Psest_0338 0.35 +0.6
360,576 - Psest_0338 0.35 +0.3
360,576 - Psest_0338 0.35 -1.3
360,576 - Psest_0338 0.35 -0.8

Or see this region's nucleotide sequence