Strain Fitness in Marinobacter adhaerens HP15 around HP15_267

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_266 and HP15_267 are separated by 230 nucleotidesHP15_267 and HP15_268 are separated by 170 nucleotidesHP15_268 and HP15_269 are separated by 79 nucleotides HP15_266: HP15_266 - UBA/THIF-type NAD/FAD binding protein, at 256,634 to 257,467 _266 HP15_267: HP15_267 - acyl-CoA dehydrogenase family protein, at 257,698 to 259,473 _267 HP15_268: HP15_268 - short-chain dehydrogenase/reductase SDR, at 259,644 to 260,387 _268 HP15_269: HP15_269 - anti-sigma factor ChrR, at 260,467 to 261,105 _269 Position (kb) 257 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 256.717 kb on + strandat 256.810 kb on + strand, within HP15_266at 256.918 kb on - strand, within HP15_266at 256.930 kb on + strand, within HP15_266at 256.936 kb on - strand, within HP15_266at 256.943 kb on + strand, within HP15_266at 257.016 kb on - strand, within HP15_266at 257.066 kb on + strand, within HP15_266at 257.074 kb on - strand, within HP15_266at 257.137 kb on - strand, within HP15_266at 257.332 kb on + strand, within HP15_266at 257.337 kb on + strand, within HP15_266at 257.356 kb on - strand, within HP15_266at 257.443 kb on - strandat 257.448 kb on - strandat 257.586 kb on - strandat 257.677 kb on - strandat 257.705 kb on + strandat 257.732 kb on + strandat 257.836 kb on + strandat 257.888 kb on + strand, within HP15_267at 257.891 kb on - strand, within HP15_267at 257.891 kb on - strand, within HP15_267at 257.896 kb on - strand, within HP15_267at 257.953 kb on - strand, within HP15_267at 258.030 kb on - strand, within HP15_267at 258.037 kb on + strand, within HP15_267at 258.077 kb on + strand, within HP15_267at 258.107 kb on + strand, within HP15_267at 258.236 kb on + strand, within HP15_267at 258.273 kb on - strand, within HP15_267at 258.369 kb on + strand, within HP15_267at 258.401 kb on - strand, within HP15_267at 258.412 kb on - strand, within HP15_267at 258.423 kb on - strand, within HP15_267at 258.522 kb on - strand, within HP15_267at 258.570 kb on + strand, within HP15_267at 258.570 kb on + strand, within HP15_267at 258.570 kb on + strand, within HP15_267at 258.570 kb on + strand, within HP15_267at 258.578 kb on - strand, within HP15_267at 258.578 kb on - strand, within HP15_267at 258.799 kb on - strand, within HP15_267at 258.832 kb on - strand, within HP15_267at 258.881 kb on + strand, within HP15_267at 258.935 kb on - strand, within HP15_267at 258.967 kb on - strand, within HP15_267at 259.049 kb on - strand, within HP15_267at 259.082 kb on - strand, within HP15_267at 259.088 kb on - strand, within HP15_267at 259.094 kb on - strand, within HP15_267at 259.143 kb on + strand, within HP15_267at 259.165 kb on - strand, within HP15_267at 259.165 kb on - strand, within HP15_267at 259.356 kb on - strandat 259.418 kb on - strandat 259.515 kb on + strandat 259.523 kb on - strandat 259.538 kb on + strandat 259.596 kb on + strandat 259.629 kb on - strandat 259.702 kb on + strandat 259.770 kb on + strand, within HP15_268at 259.810 kb on - strand, within HP15_268at 259.865 kb on + strand, within HP15_268at 259.918 kb on - strand, within HP15_268at 259.926 kb on - strand, within HP15_268at 259.972 kb on - strand, within HP15_268at 259.974 kb on - strand, within HP15_268at 260.144 kb on + strand, within HP15_268at 260.144 kb on + strand, within HP15_268at 260.193 kb on + strand, within HP15_268at 260.201 kb on - strand, within HP15_268at 260.284 kb on + strand, within HP15_268at 260.292 kb on - strand, within HP15_268at 260.292 kb on - strand, within HP15_268at 260.292 kb on - strand, within HP15_268at 260.368 kb on + strandat 260.368 kb on + strandat 260.368 kb on + strandat 260.368 kb on + strandat 260.376 kb on - strandat 260.376 kb on - strandat 260.376 kb on - strandat 260.376 kb on - strandat 260.381 kb on - strandat 260.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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256,717 + +0.1
256,810 + HP15_266 0.21 +0.4
256,918 - HP15_266 0.34 -0.2
256,930 + HP15_266 0.35 +0.5
256,936 - HP15_266 0.36 -0.2
256,943 + HP15_266 0.37 -0.2
257,016 - HP15_266 0.46 +0.2
257,066 + HP15_266 0.52 -0.6
257,074 - HP15_266 0.53 -0.0
257,137 - HP15_266 0.60 -0.9
257,332 + HP15_266 0.84 -0.2
257,337 + HP15_266 0.84 +0.3
257,356 - HP15_266 0.87 -1.5
257,443 - -0.0
257,448 - -2.0
257,586 - +0.5
257,677 - +0.0
257,705 + +0.1
257,732 + -3.0
257,836 + -1.2
257,888 + HP15_267 0.11 +1.0
257,891 - HP15_267 0.11 +0.5
257,891 - HP15_267 0.11 -0.5
257,896 - HP15_267 0.11 -0.1
257,953 - HP15_267 0.14 -0.1
258,030 - HP15_267 0.19 +0.9
258,037 + HP15_267 0.19 +0.2
258,077 + HP15_267 0.21 -0.5
258,107 + HP15_267 0.23 +0.3
258,236 + HP15_267 0.30 +0.4
258,273 - HP15_267 0.32 +0.2
258,369 + HP15_267 0.38 +0.8
258,401 - HP15_267 0.40 -0.3
258,412 - HP15_267 0.40 -0.2
258,423 - HP15_267 0.41 -0.2
258,522 - HP15_267 0.46 +1.0
258,570 + HP15_267 0.49 +1.2
258,570 + HP15_267 0.49 -1.6
258,570 + HP15_267 0.49 +0.3
258,570 + HP15_267 0.49 -0.7
258,578 - HP15_267 0.50 +0.1
258,578 - HP15_267 0.50 -0.1
258,799 - HP15_267 0.62 +0.5
258,832 - HP15_267 0.64 +0.7
258,881 + HP15_267 0.67 +1.0
258,935 - HP15_267 0.70 +0.4
258,967 - HP15_267 0.71 -0.1
259,049 - HP15_267 0.76 -0.3
259,082 - HP15_267 0.78 -0.1
259,088 - HP15_267 0.78 +2.0
259,094 - HP15_267 0.79 -1.3
259,143 + HP15_267 0.81 +0.4
259,165 - HP15_267 0.83 +0.3
259,165 - HP15_267 0.83 +2.8
259,356 - -1.3
259,418 - -0.1
259,515 + +0.0
259,523 - -0.0
259,538 + +0.2
259,596 + +0.5
259,629 - -0.1
259,702 + -1.0
259,770 + HP15_268 0.17 +1.1
259,810 - HP15_268 0.22 -0.1
259,865 + HP15_268 0.30 -0.4
259,918 - HP15_268 0.37 +0.2
259,926 - HP15_268 0.38 +0.4
259,972 - HP15_268 0.44 -0.5
259,974 - HP15_268 0.44 +1.3
260,144 + HP15_268 0.67 +0.4
260,144 + HP15_268 0.67 +2.4
260,193 + HP15_268 0.74 +0.0
260,201 - HP15_268 0.75 +0.1
260,284 + HP15_268 0.86 -0.3
260,292 - HP15_268 0.87 -0.7
260,292 - HP15_268 0.87 +0.1
260,292 - HP15_268 0.87 +1.0
260,368 + -0.2
260,368 + +0.4
260,368 + -0.4
260,368 + -0.5
260,376 - +0.3
260,376 - +0.8
260,376 - -0.2
260,376 - +0.3
260,381 - -0.2
260,409 - -0.8

Or see this region's nucleotide sequence