Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3201 and Dsui_3202 are separated by 92 nucleotides Dsui_3202 and Dsui_3203 are separated by 30 nucleotides Dsui_3203 and Dsui_3204 are separated by 68 nucleotides
Dsui_3201: Dsui_3201 - 3-isopropylmalate dehydratase, large subunit, at 3,436,248 to 3,437,654
_3201
Dsui_3202: Dsui_3202 - Peptidase family M48, at 3,437,747 to 3,438,619
_3202
Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816
_3203
Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991
_3204
Position (kb)
3438
3439
3440 Strain fitness (log2 ratio)
-1
0
1
2 at 3437.730 kb on - strand at 3437.838 kb on + strand at 3437.871 kb on - strand, within Dsui_3202 at 3437.980 kb on - strand, within Dsui_3202 at 3437.998 kb on - strand, within Dsui_3202 at 3438.004 kb on - strand, within Dsui_3202 at 3438.041 kb on - strand, within Dsui_3202 at 3438.093 kb on - strand, within Dsui_3202 at 3438.098 kb on - strand, within Dsui_3202 at 3438.129 kb on - strand, within Dsui_3202 at 3438.252 kb on - strand, within Dsui_3202 at 3438.308 kb on - strand, within Dsui_3202 at 3438.356 kb on - strand, within Dsui_3202 at 3438.369 kb on - strand, within Dsui_3202 at 3438.499 kb on - strand, within Dsui_3202 at 3438.656 kb on - strand at 3438.693 kb on - strand at 3438.763 kb on - strand at 3438.773 kb on - strand, within Dsui_3203 at 3438.773 kb on - strand, within Dsui_3203 at 3438.906 kb on - strand, within Dsui_3203 at 3439.156 kb on + strand at 3439.202 kb on - strand, within Dsui_3203 at 3439.326 kb on - strand, within Dsui_3203 at 3439.443 kb on + strand at 3439.486 kb on - strand, within Dsui_3203 at 3439.513 kb on - strand, within Dsui_3203 at 3439.575 kb on - strand, within Dsui_3203 at 3439.669 kb on - strand, within Dsui_3203 at 3439.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,437,730 - -0.4 3,437,838 + +0.1 3,437,871 - Dsui_3202 0.14 +0.3 3,437,980 - Dsui_3202 0.27 -0.3 3,437,998 - Dsui_3202 0.29 +0.1 3,438,004 - Dsui_3202 0.29 +0.7 3,438,041 - Dsui_3202 0.34 +0.2 3,438,093 - Dsui_3202 0.40 +0.1 3,438,098 - Dsui_3202 0.40 +1.1 3,438,129 - Dsui_3202 0.44 +0.3 3,438,252 - Dsui_3202 0.58 +0.7 3,438,308 - Dsui_3202 0.64 -0.1 3,438,356 - Dsui_3202 0.70 -0.8 3,438,369 - Dsui_3202 0.71 -0.2 3,438,499 - Dsui_3202 0.86 +0.7 3,438,656 - +0.4 3,438,693 - +0.5 3,438,763 - -0.2 3,438,773 - Dsui_3203 0.11 +0.2 3,438,773 - Dsui_3203 0.11 -0.7 3,438,906 - Dsui_3203 0.22 -0.5 3,439,156 + +2.3 3,439,202 - Dsui_3203 0.47 -1.1 3,439,326 - Dsui_3203 0.58 -0.9 3,439,443 + -0.3 3,439,486 - Dsui_3203 0.72 -1.1 3,439,513 - Dsui_3203 0.74 -0.5 3,439,575 - Dsui_3203 0.79 +0.7 3,439,669 - Dsui_3203 0.87 -0.5 3,439,676 + +0.7
Or see this region's nucleotide sequence