Strain Fitness in Dechlorosoma suillum PS around Dsui_3085

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3084 and Dsui_3085 are separated by 274 nucleotidesDsui_3085 and Dsui_3086 overlap by 1 nucleotides Dsui_3084: Dsui_3084 - cysteinyl-tRNA synthetase, at 3,302,052 to 3,303,482 _3084 Dsui_3085: Dsui_3085 - tetratricopeptide repeat protein, at 3,303,757 to 3,304,920 _3085 Dsui_3086: Dsui_3086 - hypothetical protein, at 3,304,920 to 3,306,221 _3086 Position (kb) 3303 3304 3305Strain fitness (log2 ratio) -2 -1 0 1 2at 3303.550 kb on - strandat 3303.560 kb on - strandat 3303.597 kb on - strandat 3303.631 kb on - strandat 3303.722 kb on - strandat 3303.750 kb on - strandat 3303.768 kb on + strandat 3303.817 kb on + strandat 3303.863 kb on + strandat 3304.080 kb on + strand, within Dsui_3085at 3304.107 kb on + strand, within Dsui_3085at 3304.126 kb on + strand, within Dsui_3085at 3304.137 kb on + strand, within Dsui_3085at 3304.137 kb on + strand, within Dsui_3085at 3304.171 kb on + strand, within Dsui_3085at 3304.234 kb on + strand, within Dsui_3085at 3304.279 kb on - strandat 3304.281 kb on + strand, within Dsui_3085at 3304.482 kb on + strand, within Dsui_3085at 3304.607 kb on - strand, within Dsui_3085at 3304.644 kb on + strand, within Dsui_3085at 3304.698 kb on + strand, within Dsui_3085at 3304.757 kb on - strandat 3304.770 kb on + strand, within Dsui_3085at 3304.818 kb on + strandat 3305.022 kb on + strandat 3305.130 kb on - strand, within Dsui_3086at 3305.181 kb on + strand, within Dsui_3086at 3305.189 kb on - strandat 3305.240 kb on + strand, within Dsui_3086at 3305.240 kb on + strand, within Dsui_3086at 3305.307 kb on + strand, within Dsui_3086at 3305.372 kb on + strand, within Dsui_3086at 3305.418 kb on + strand, within Dsui_3086at 3305.439 kb on - strandat 3305.446 kb on - strand, within Dsui_3086at 3305.480 kb on + strand, within Dsui_3086at 3305.494 kb on - strand, within Dsui_3086at 3305.518 kb on + strand, within Dsui_3086at 3305.526 kb on - strand, within Dsui_3086at 3305.536 kb on - strand, within Dsui_3086at 3305.536 kb on - strand, within Dsui_3086at 3305.559 kb on + strand, within Dsui_3086at 3305.596 kb on + strand, within Dsui_3086at 3305.633 kb on - strand, within Dsui_3086

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,303,550 - -0.2
3,303,560 - +1.3
3,303,597 - -0.7
3,303,631 - -0.2
3,303,722 - +0.1
3,303,750 - -1.5
3,303,768 + -0.3
3,303,817 + +1.1
3,303,863 + +0.1
3,304,080 + Dsui_3085 0.28 +0.7
3,304,107 + Dsui_3085 0.30 +0.6
3,304,126 + Dsui_3085 0.32 -0.6
3,304,137 + Dsui_3085 0.33 +2.0
3,304,137 + Dsui_3085 0.33 -0.8
3,304,171 + Dsui_3085 0.36 -0.6
3,304,234 + Dsui_3085 0.41 +1.1
3,304,279 - +0.1
3,304,281 + Dsui_3085 0.45 -0.7
3,304,482 + Dsui_3085 0.62 +0.2
3,304,607 - Dsui_3085 0.73 -1.1
3,304,644 + Dsui_3085 0.76 -0.3
3,304,698 + Dsui_3085 0.81 +0.3
3,304,757 - +1.7
3,304,770 + Dsui_3085 0.87 -0.6
3,304,818 + -0.2
3,305,022 + -0.4
3,305,130 - Dsui_3086 0.16 -0.4
3,305,181 + Dsui_3086 0.20 +0.0
3,305,189 - -0.3
3,305,240 + Dsui_3086 0.25 -0.2
3,305,240 + Dsui_3086 0.25 -0.5
3,305,307 + Dsui_3086 0.30 -0.0
3,305,372 + Dsui_3086 0.35 -0.4
3,305,418 + Dsui_3086 0.38 -0.9
3,305,439 - +0.4
3,305,446 - Dsui_3086 0.40 +0.4
3,305,480 + Dsui_3086 0.43 +0.5
3,305,494 - Dsui_3086 0.44 +0.0
3,305,518 + Dsui_3086 0.46 +0.2
3,305,526 - Dsui_3086 0.47 +0.1
3,305,536 - Dsui_3086 0.47 +0.9
3,305,536 - Dsui_3086 0.47 -1.3
3,305,559 + Dsui_3086 0.49 -0.7
3,305,596 + Dsui_3086 0.52 +0.1
3,305,633 - Dsui_3086 0.55 -2.0

Or see this region's nucleotide sequence