Strain Fitness in Dechlorosoma suillum PS around Dsui_3066

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3065 and Dsui_3066 are separated by 247 nucleotidesDsui_3066 and Dsui_3067 are separated by 3 nucleotidesDsui_3067 and Dsui_3068 are separated by 94 nucleotides Dsui_3065: Dsui_3065 - carbamoyl-phosphate synthase, small subunit, at 3,281,423 to 3,282,571 _3065 Dsui_3066: Dsui_3066 - dihydrodipicolinate reductase, at 3,282,819 to 3,283,625 _3066 Dsui_3067: Dsui_3067 - small protein A (tmRNA-binding), at 3,283,629 to 3,284,159 _3067 Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724 _3068 Position (kb) 3282 3283 3284Strain fitness (log2 ratio) -2 -1 0 1at 3282.740 kb on - strandat 3282.783 kb on + strandat 3282.783 kb on + strandat 3283.056 kb on + strand, within Dsui_3066at 3283.056 kb on + strand, within Dsui_3066at 3283.099 kb on - strand, within Dsui_3066at 3283.119 kb on - strand, within Dsui_3066at 3283.252 kb on - strand, within Dsui_3066at 3283.421 kb on + strandat 3283.429 kb on - strand, within Dsui_3066at 3283.429 kb on - strand, within Dsui_3066at 3283.459 kb on + strandat 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.550 kb on + strandat 3283.550 kb on + strandat 3283.580 kb on - strandat 3283.647 kb on - strandat 3283.697 kb on - strand, within Dsui_3067at 3283.725 kb on - strand, within Dsui_3067at 3284.245 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,282,740 - +0.3
3,282,783 + -0.5
3,282,783 + -0.2
3,283,056 + Dsui_3066 0.29 -0.6
3,283,056 + Dsui_3066 0.29 -0.9
3,283,099 - Dsui_3066 0.35 -2.7
3,283,119 - Dsui_3066 0.37 -1.3
3,283,252 - Dsui_3066 0.54 -1.3
3,283,421 + -0.9
3,283,429 - Dsui_3066 0.76 -1.4
3,283,429 - Dsui_3066 0.76 -1.4
3,283,459 + +0.1
3,283,467 - Dsui_3066 0.80 -1.1
3,283,467 - Dsui_3066 0.80 -1.9
3,283,467 - Dsui_3066 0.80 -1.2
3,283,467 - Dsui_3066 0.80 -1.5
3,283,550 + -1.1
3,283,550 + -1.0
3,283,580 - -2.1
3,283,647 - +0.1
3,283,697 - Dsui_3067 0.13 -0.0
3,283,725 - Dsui_3067 0.18 -0.8
3,284,245 + +0.4

Or see this region's nucleotide sequence