Strain Fitness in Dechlorosoma suillum PS around Dsui_2998

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2996 and Dsui_2997 are separated by 124 nucleotidesDsui_2997 and Dsui_2998 are separated by 225 nucleotidesDsui_2998 and Dsui_2999 are separated by 4 nucleotides Dsui_2996: Dsui_2996 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 3,205,475 to 3,207,289 _2996 Dsui_2997: Dsui_2997 - hypothetical protein, at 3,207,414 to 3,207,710 _2997 Dsui_2998: Dsui_2998 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 3,207,936 to 3,208,802 _2998 Dsui_2999: Dsui_2999 - histidine kinase,HAMP domain-containing protein,histidine kinase, at 3,208,807 to 3,210,237 _2999 Position (kb) 3207 3208 3209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3206.960 kb on - strand, within Dsui_2996at 3207.087 kb on - strand, within Dsui_2996at 3207.108 kb on - strandat 3207.158 kb on - strandat 3207.315 kb on + strandat 3207.484 kb on - strandat 3207.520 kb on + strand, within Dsui_2997at 3207.584 kb on - strand, within Dsui_2997at 3207.624 kb on + strand, within Dsui_2997at 3207.679 kb on - strand, within Dsui_2997at 3207.968 kb on + strandat 3207.978 kb on + strandat 3208.055 kb on + strand, within Dsui_2998at 3208.055 kb on + strand, within Dsui_2998at 3208.055 kb on + strand, within Dsui_2998at 3208.063 kb on - strandat 3208.063 kb on - strandat 3208.199 kb on + strand, within Dsui_2998at 3208.248 kb on - strandat 3208.329 kb on + strand, within Dsui_2998at 3208.393 kb on + strand, within Dsui_2998at 3208.414 kb on - strandat 3208.492 kb on + strand, within Dsui_2998at 3208.500 kb on - strandat 3208.575 kb on + strand, within Dsui_2998at 3208.612 kb on - strand, within Dsui_2998at 3208.657 kb on + strand, within Dsui_2998at 3208.662 kb on + strand, within Dsui_2998at 3208.670 kb on - strandat 3208.840 kb on + strandat 3208.845 kb on + strandat 3208.845 kb on + strandat 3209.034 kb on + strand, within Dsui_2999at 3209.051 kb on - strand, within Dsui_2999at 3209.087 kb on - strand, within Dsui_2999at 3209.213 kb on - strand, within Dsui_2999at 3209.447 kb on - strandat 3209.447 kb on - strandat 3209.457 kb on - strand, within Dsui_2999at 3209.528 kb on + strand, within Dsui_2999at 3209.677 kb on + strand, within Dsui_2999at 3209.685 kb on - strandat 3209.712 kb on + strand, within Dsui_2999at 3209.800 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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3,206,960 - Dsui_2996 0.82 -0.7
3,207,087 - Dsui_2996 0.89 -0.2
3,207,108 - +0.1
3,207,158 - +0.7
3,207,315 + +0.2
3,207,484 - +1.7
3,207,520 + Dsui_2997 0.36 -1.2
3,207,584 - Dsui_2997 0.57 -0.3
3,207,624 + Dsui_2997 0.71 -0.7
3,207,679 - Dsui_2997 0.89 +0.2
3,207,968 + -0.7
3,207,978 + -0.1
3,208,055 + Dsui_2998 0.14 -0.6
3,208,055 + Dsui_2998 0.14 -0.5
3,208,055 + Dsui_2998 0.14 +0.5
3,208,063 - -0.3
3,208,063 - +1.7
3,208,199 + Dsui_2998 0.30 -1.5
3,208,248 - +1.2
3,208,329 + Dsui_2998 0.45 -0.4
3,208,393 + Dsui_2998 0.53 -1.2
3,208,414 - +1.7
3,208,492 + Dsui_2998 0.64 -1.3
3,208,500 - +0.2
3,208,575 + Dsui_2998 0.74 -0.7
3,208,612 - Dsui_2998 0.78 -1.1
3,208,657 + Dsui_2998 0.83 -2.8
3,208,662 + Dsui_2998 0.84 -0.7
3,208,670 - +1.7
3,208,840 + -0.5
3,208,845 + -1.0
3,208,845 + -0.9
3,209,034 + Dsui_2999 0.16 -3.2
3,209,051 - Dsui_2999 0.17 +0.3
3,209,087 - Dsui_2999 0.20 -0.3
3,209,213 - Dsui_2999 0.28 +1.7
3,209,447 - +3.3
3,209,447 - +0.2
3,209,457 - Dsui_2999 0.45 -0.1
3,209,528 + Dsui_2999 0.50 -1.1
3,209,677 + Dsui_2999 0.61 +0.1
3,209,685 - +0.7
3,209,712 + Dsui_2999 0.63 -0.3
3,209,800 - -0.3

Or see this region's nucleotide sequence