Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2996 and Dsui_2997 are separated by 124 nucleotides Dsui_2997 and Dsui_2998 are separated by 225 nucleotides Dsui_2998 and Dsui_2999 are separated by 4 nucleotides
Dsui_2996: Dsui_2996 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 3,205,475 to 3,207,289
_2996
Dsui_2997: Dsui_2997 - hypothetical protein, at 3,207,414 to 3,207,710
_2997
Dsui_2998: Dsui_2998 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 3,207,936 to 3,208,802
_2998
Dsui_2999: Dsui_2999 - histidine kinase,HAMP domain-containing protein,histidine kinase, at 3,208,807 to 3,210,237
_2999
Position (kb)
3207
3208
3209 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3206.960 kb on - strand, within Dsui_2996 at 3207.087 kb on - strand, within Dsui_2996 at 3207.108 kb on - strand at 3207.158 kb on - strand at 3207.315 kb on + strand at 3207.484 kb on - strand at 3207.520 kb on + strand, within Dsui_2997 at 3207.584 kb on - strand, within Dsui_2997 at 3207.624 kb on + strand, within Dsui_2997 at 3207.679 kb on - strand, within Dsui_2997 at 3207.968 kb on + strand at 3207.978 kb on + strand at 3208.055 kb on + strand, within Dsui_2998 at 3208.055 kb on + strand, within Dsui_2998 at 3208.055 kb on + strand, within Dsui_2998 at 3208.063 kb on - strand at 3208.063 kb on - strand at 3208.199 kb on + strand, within Dsui_2998 at 3208.248 kb on - strand at 3208.329 kb on + strand, within Dsui_2998 at 3208.393 kb on + strand, within Dsui_2998 at 3208.414 kb on - strand at 3208.492 kb on + strand, within Dsui_2998 at 3208.500 kb on - strand at 3208.575 kb on + strand, within Dsui_2998 at 3208.612 kb on - strand, within Dsui_2998 at 3208.657 kb on + strand, within Dsui_2998 at 3208.662 kb on + strand, within Dsui_2998 at 3208.670 kb on - strand at 3208.840 kb on + strand at 3208.845 kb on + strand at 3208.845 kb on + strand at 3209.034 kb on + strand, within Dsui_2999 at 3209.051 kb on - strand, within Dsui_2999 at 3209.087 kb on - strand, within Dsui_2999 at 3209.213 kb on - strand, within Dsui_2999 at 3209.447 kb on - strand at 3209.447 kb on - strand at 3209.457 kb on - strand, within Dsui_2999 at 3209.528 kb on + strand, within Dsui_2999 at 3209.677 kb on + strand, within Dsui_2999 at 3209.685 kb on - strand at 3209.712 kb on + strand, within Dsui_2999 at 3209.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 3,206,960 - Dsui_2996 0.82 -0.7 3,207,087 - Dsui_2996 0.89 -0.2 3,207,108 - +0.1 3,207,158 - +0.7 3,207,315 + +0.2 3,207,484 - +1.7 3,207,520 + Dsui_2997 0.36 -1.2 3,207,584 - Dsui_2997 0.57 -0.3 3,207,624 + Dsui_2997 0.71 -0.7 3,207,679 - Dsui_2997 0.89 +0.2 3,207,968 + -0.7 3,207,978 + -0.1 3,208,055 + Dsui_2998 0.14 -0.6 3,208,055 + Dsui_2998 0.14 -0.5 3,208,055 + Dsui_2998 0.14 +0.5 3,208,063 - -0.3 3,208,063 - +1.7 3,208,199 + Dsui_2998 0.30 -1.5 3,208,248 - +1.2 3,208,329 + Dsui_2998 0.45 -0.4 3,208,393 + Dsui_2998 0.53 -1.2 3,208,414 - +1.7 3,208,492 + Dsui_2998 0.64 -1.3 3,208,500 - +0.2 3,208,575 + Dsui_2998 0.74 -0.7 3,208,612 - Dsui_2998 0.78 -1.1 3,208,657 + Dsui_2998 0.83 -2.8 3,208,662 + Dsui_2998 0.84 -0.7 3,208,670 - +1.7 3,208,840 + -0.5 3,208,845 + -1.0 3,208,845 + -0.9 3,209,034 + Dsui_2999 0.16 -3.2 3,209,051 - Dsui_2999 0.17 +0.3 3,209,087 - Dsui_2999 0.20 -0.3 3,209,213 - Dsui_2999 0.28 +1.7 3,209,447 - +3.3 3,209,447 - +0.2 3,209,457 - Dsui_2999 0.45 -0.1 3,209,528 + Dsui_2999 0.50 -1.1 3,209,677 + Dsui_2999 0.61 +0.1 3,209,685 - +0.7 3,209,712 + Dsui_2999 0.63 -0.3 3,209,800 - -0.3
Or see this region's nucleotide sequence