Strain Fitness in Dechlorosoma suillum PS around Dsui_2461

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2459 and Dsui_2460 overlap by 8 nucleotidesDsui_2460 and Dsui_2461 overlap by 4 nucleotidesDsui_2461 and Dsui_2462 are separated by 30 nucleotidesDsui_2462 and Dsui_2463 are separated by 67 nucleotides Dsui_2459: Dsui_2459 - hypothetical protein, at 2,617,667 to 2,618,038 _2459 Dsui_2460: Dsui_2460 - ribonuclease III, at 2,618,031 to 2,618,723 _2460 Dsui_2461: Dsui_2461 - GTP-binding protein Era, at 2,618,720 to 2,619,613 _2461 Dsui_2462: Dsui_2462 - DNA repair protein RecO, at 2,619,644 to 2,620,357 _2462 Dsui_2463: Dsui_2463 - pyridoxine 5''-phosphate synthase, at 2,620,425 to 2,621,177 _2463 Position (kb) 2618 2619 2620Strain fitness (log2 ratio) -2 -1 0 1at 2617.873 kb on + strand, within Dsui_2459at 2617.887 kb on + strand, within Dsui_2459at 2618.023 kb on + strandat 2618.023 kb on + strandat 2618.023 kb on + strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2618.031 kb on - strandat 2619.597 kb on + strandat 2619.634 kb on + strandat 2619.659 kb on + strandat 2619.683 kb on + strandat 2619.747 kb on + strand, within Dsui_2462at 2619.747 kb on + strand, within Dsui_2462at 2619.760 kb on + strand, within Dsui_2462at 2619.818 kb on + strand, within Dsui_2462at 2619.829 kb on + strand, within Dsui_2462at 2619.862 kb on + strand, within Dsui_2462at 2619.949 kb on - strand, within Dsui_2462at 2619.987 kb on - strand, within Dsui_2462at 2619.995 kb on + strand, within Dsui_2462at 2620.037 kb on + strand, within Dsui_2462at 2620.091 kb on - strand, within Dsui_2462at 2620.116 kb on - strand, within Dsui_2462at 2620.145 kb on - strandat 2620.248 kb on + strand, within Dsui_2462at 2620.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,617,873 + Dsui_2459 0.55 -0.9
2,617,887 + Dsui_2459 0.59 -2.7
2,618,023 + +0.1
2,618,023 + -0.4
2,618,023 + -0.4
2,618,031 - +0.6
2,618,031 - -0.3
2,618,031 - +0.7
2,618,031 - +0.4
2,619,597 + -0.3
2,619,634 + +0.1
2,619,659 + +0.3
2,619,683 + +0.0
2,619,747 + Dsui_2462 0.14 -0.2
2,619,747 + Dsui_2462 0.14 +0.2
2,619,760 + Dsui_2462 0.16 -0.5
2,619,818 + Dsui_2462 0.24 +0.5
2,619,829 + Dsui_2462 0.26 -0.2
2,619,862 + Dsui_2462 0.31 +0.1
2,619,949 - Dsui_2462 0.43 -0.1
2,619,987 - Dsui_2462 0.48 -0.8
2,619,995 + Dsui_2462 0.49 +0.3
2,620,037 + Dsui_2462 0.55 -0.1
2,620,091 - Dsui_2462 0.63 -0.6
2,620,116 - Dsui_2462 0.66 +0.9
2,620,145 - +1.6
2,620,248 + Dsui_2462 0.85 -0.0
2,620,323 - +0.2

Or see this region's nucleotide sequence