Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2393 and Dsui_2394 are separated by 3 nucleotides Dsui_2394 and Dsui_2395 are separated by 19 nucleotides Dsui_2395 and Dsui_2396 overlap by 4 nucleotides
Dsui_2393: Dsui_2393 - uncharacterized domain HDIG-containing protein, at 2,544,588 to 2,545,811
_2393
Dsui_2394: Dsui_2394 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,545,815 to 2,548,775
_2394
Dsui_2395: Dsui_2395 - hypothetical protein, at 2,548,795 to 2,549,112
_2395
Dsui_2396: Dsui_2396 - putative domain HDIG-containing protein, at 2,549,109 to 2,549,951
_2396
Position (kb)
2545
2546
2547
2548
2549 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2544.896 kb on + strand, within Dsui_2393 at 2545.080 kb on + strand, within Dsui_2393 at 2545.309 kb on + strand, within Dsui_2393 at 2545.312 kb on + strand, within Dsui_2393 at 2545.444 kb on - strand at 2545.653 kb on + strand, within Dsui_2393 at 2545.871 kb on - strand at 2545.927 kb on + strand at 2545.970 kb on - strand at 2545.970 kb on - strand at 2545.974 kb on - strand at 2546.012 kb on + strand at 2546.098 kb on + strand at 2546.105 kb on + strand at 2546.438 kb on + strand, within Dsui_2394 at 2546.463 kb on + strand, within Dsui_2394 at 2546.533 kb on - strand at 2546.548 kb on + strand, within Dsui_2394 at 2546.982 kb on + strand, within Dsui_2394 at 2546.993 kb on + strand, within Dsui_2394 at 2547.007 kb on - strand at 2547.060 kb on - strand at 2547.108 kb on + strand, within Dsui_2394 at 2547.108 kb on + strand, within Dsui_2394 at 2547.259 kb on - strand at 2547.329 kb on + strand, within Dsui_2394 at 2547.452 kb on + strand, within Dsui_2394 at 2547.463 kb on - strand, within Dsui_2394 at 2547.503 kb on + strand, within Dsui_2394 at 2547.533 kb on - strand, within Dsui_2394 at 2547.623 kb on + strand, within Dsui_2394 at 2547.652 kb on - strand at 2547.695 kb on - strand at 2547.865 kb on - strand at 2547.882 kb on + strand, within Dsui_2394 at 2547.943 kb on - strand, within Dsui_2394 at 2548.223 kb on + strand, within Dsui_2394 at 2548.341 kb on + strand, within Dsui_2394 at 2548.409 kb on + strand, within Dsui_2394 at 2548.486 kb on - strand at 2548.650 kb on - strand at 2548.712 kb on + strand at 2548.747 kb on - strand at 2548.873 kb on + strand, within Dsui_2395 at 2549.057 kb on + strand, within Dsui_2395 at 2549.060 kb on + strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.068 kb on - strand, within Dsui_2395 at 2549.068 kb on - strand at 2549.143 kb on - strand at 2549.159 kb on - strand at 2549.210 kb on + strand, within Dsui_2396 at 2549.250 kb on - strand at 2549.276 kb on - strand at 2549.335 kb on + strand, within Dsui_2396 at 2549.339 kb on + strand, within Dsui_2396 at 2549.347 kb on - strand at 2549.395 kb on + strand, within Dsui_2396 at 2549.545 kb on + strand, within Dsui_2396 at 2549.586 kb on + strand, within Dsui_2396 at 2549.629 kb on - strand at 2549.646 kb on + strand, within Dsui_2396 at 2549.654 kb on - strand, within Dsui_2396 at 2549.669 kb on - strand, within Dsui_2396
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,544,896 + Dsui_2393 0.25 -0.4 2,545,080 + Dsui_2393 0.40 +0.1 2,545,309 + Dsui_2393 0.59 +0.6 2,545,312 + Dsui_2393 0.59 +0.4 2,545,444 - +3.0 2,545,653 + Dsui_2393 0.87 +1.0 2,545,871 - -0.8 2,545,927 + +0.6 2,545,970 - +0.7 2,545,970 - +0.4 2,545,974 - -0.0 2,546,012 + -0.7 2,546,098 + -0.4 2,546,105 + +0.4 2,546,438 + Dsui_2394 0.21 +0.1 2,546,463 + Dsui_2394 0.22 +0.0 2,546,533 - +1.0 2,546,548 + Dsui_2394 0.25 +1.2 2,546,982 + Dsui_2394 0.39 +0.2 2,546,993 + Dsui_2394 0.40 -0.5 2,547,007 - -0.0 2,547,060 - +1.0 2,547,108 + Dsui_2394 0.44 +0.6 2,547,108 + Dsui_2394 0.44 -0.1 2,547,259 - +0.2 2,547,329 + Dsui_2394 0.51 -0.3 2,547,452 + Dsui_2394 0.55 +0.5 2,547,463 - Dsui_2394 0.56 +0.4 2,547,503 + Dsui_2394 0.57 +0.7 2,547,533 - Dsui_2394 0.58 -0.0 2,547,623 + Dsui_2394 0.61 +0.7 2,547,652 - +2.0 2,547,695 - +2.0 2,547,865 - +1.0 2,547,882 + Dsui_2394 0.70 -0.5 2,547,943 - Dsui_2394 0.72 +1.5 2,548,223 + Dsui_2394 0.81 +2.0 2,548,341 + Dsui_2394 0.85 +0.7 2,548,409 + Dsui_2394 0.88 +1.1 2,548,486 - -0.3 2,548,650 - +0.4 2,548,712 + -0.0 2,548,747 - +1.0 2,548,873 + Dsui_2395 0.25 -0.9 2,549,057 + Dsui_2395 0.82 +0.1 2,549,060 + Dsui_2395 0.83 -0.8 2,549,068 - +2.0 2,549,068 - Dsui_2395 0.86 +1.4 2,549,068 - +1.0 2,549,143 - +1.0 2,549,159 - -0.0 2,549,210 + Dsui_2396 0.12 +0.8 2,549,250 - -0.0 2,549,276 - +0.4 2,549,335 + Dsui_2396 0.27 -1.4 2,549,339 + Dsui_2396 0.27 -0.8 2,549,347 - +1.0 2,549,395 + Dsui_2396 0.34 +0.6 2,549,545 + Dsui_2396 0.52 +0.6 2,549,586 + Dsui_2396 0.57 +1.6 2,549,629 - -0.8 2,549,646 + Dsui_2396 0.64 +0.1 2,549,654 - Dsui_2396 0.65 +0.2 2,549,669 - Dsui_2396 0.66 +1.0
Or see this region's nucleotide sequence