Strain Fitness in Dechlorosoma suillum PS around Dsui_2353

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2351 and Dsui_2352 are separated by 121 nucleotidesDsui_2352 and Dsui_2353 are separated by 6 nucleotidesDsui_2353 and Dsui_2354 are separated by 121 nucleotidesDsui_2354 and Dsui_2355 are separated by 14 nucleotides Dsui_2351: Dsui_2351 - uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein, at 2,503,868 to 2,504,242 _2351 Dsui_2352: Dsui_2352 - hypothetical protein, at 2,504,364 to 2,505,068 _2352 Dsui_2353: Dsui_2353 - transcriptional regulator, at 2,505,075 to 2,505,974 _2353 Dsui_2354: Dsui_2354 - hypothetical protein, at 2,506,096 to 2,506,941 _2354 Dsui_2355: Dsui_2355 - cytochrome B561, at 2,506,956 to 2,507,495 _2355 Position (kb) 2505 2506Strain fitness (log2 ratio) -1 0 1 2 3at 2504.091 kb on + strandat 2504.091 kb on + strandat 2504.126 kb on + strandat 2504.136 kb on + strandat 2504.379 kb on + strandat 2504.615 kb on - strandat 2504.677 kb on + strandat 2504.853 kb on + strand, within Dsui_2352at 2504.867 kb on + strand, within Dsui_2352at 2504.869 kb on - strand, within Dsui_2352at 2504.889 kb on + strand, within Dsui_2352at 2504.889 kb on + strandat 2504.906 kb on + strandat 2504.961 kb on + strand, within Dsui_2352at 2504.984 kb on + strandat 2504.996 kb on + strand, within Dsui_2352at 2505.012 kb on + strandat 2505.335 kb on + strandat 2505.368 kb on + strand, within Dsui_2353at 2505.368 kb on + strand, within Dsui_2353at 2505.368 kb on + strand, within Dsui_2353at 2505.376 kb on - strand, within Dsui_2353at 2505.404 kb on - strand, within Dsui_2353at 2505.435 kb on + strandat 2505.468 kb on + strandat 2505.470 kb on - strand, within Dsui_2353at 2505.483 kb on - strand, within Dsui_2353at 2505.506 kb on - strand, within Dsui_2353at 2505.565 kb on + strand, within Dsui_2353at 2505.610 kb on - strand, within Dsui_2353at 2505.610 kb on - strand, within Dsui_2353at 2505.688 kb on + strand, within Dsui_2353at 2505.696 kb on - strand, within Dsui_2353at 2505.696 kb on - strand, within Dsui_2353at 2505.704 kb on + strandat 2505.715 kb on + strand, within Dsui_2353at 2505.730 kb on - strand, within Dsui_2353at 2505.884 kb on + strand, within Dsui_2353at 2505.892 kb on - strandat 2505.930 kb on + strandat 2505.994 kb on - strandat 2506.103 kb on + strandat 2506.244 kb on + strandat 2506.263 kb on + strandat 2506.280 kb on + strandat 2506.457 kb on - strandat 2506.485 kb on + strandat 2506.638 kb on - strandat 2506.735 kb on + strandat 2506.799 kb on - strandat 2506.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,504,091 + +1.0
2,504,091 + +0.4
2,504,126 + +2.0
2,504,136 + +0.7
2,504,379 + +3.5
2,504,615 - +0.4
2,504,677 + -0.6
2,504,853 + Dsui_2352 0.69 -0.4
2,504,867 + Dsui_2352 0.71 +0.4
2,504,869 - Dsui_2352 0.72 +0.0
2,504,889 + Dsui_2352 0.74 -0.6
2,504,889 + +2.0
2,504,906 + -0.0
2,504,961 + Dsui_2352 0.85 +0.8
2,504,984 + +0.6
2,504,996 + Dsui_2352 0.90 +0.3
2,505,012 + -0.2
2,505,335 + +2.0
2,505,368 + Dsui_2353 0.33 -1.7
2,505,368 + Dsui_2353 0.33 +0.2
2,505,368 + Dsui_2353 0.33 +0.0
2,505,376 - Dsui_2353 0.33 +1.6
2,505,404 - Dsui_2353 0.37 -0.2
2,505,435 + +2.0
2,505,468 + -0.0
2,505,470 - Dsui_2353 0.44 +0.7
2,505,483 - Dsui_2353 0.45 -0.7
2,505,506 - Dsui_2353 0.48 +0.3
2,505,565 + Dsui_2353 0.54 +1.3
2,505,610 - Dsui_2353 0.59 +0.4
2,505,610 - Dsui_2353 0.59 +0.4
2,505,688 + Dsui_2353 0.68 -1.0
2,505,696 - Dsui_2353 0.69 -0.4
2,505,696 - Dsui_2353 0.69 +0.6
2,505,704 + -0.6
2,505,715 + Dsui_2353 0.71 +0.6
2,505,730 - Dsui_2353 0.73 +0.3
2,505,884 + Dsui_2353 0.90 -0.0
2,505,892 - +0.5
2,505,930 + +2.0
2,505,994 - +0.1
2,506,103 + +1.0
2,506,244 + +1.0
2,506,263 + +2.0
2,506,280 + +2.0
2,506,457 - +1.0
2,506,485 + +3.0
2,506,638 - -0.4
2,506,735 + +0.4
2,506,799 - +2.0
2,506,861 - +1.0

Or see this region's nucleotide sequence