Strain Fitness in Dechlorosoma suillum PS around Dsui_2320

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2319 and Dsui_2320 are separated by 164 nucleotidesDsui_2320 and Dsui_2321 are separated by 52 nucleotides Dsui_2319: Dsui_2319 - transcriptional regulator, at 2,473,716 to 2,474,675 _2319 Dsui_2320: Dsui_2320 - Protein of unknown function (DUF2863), at 2,474,840 to 2,476,018 _2320 Dsui_2321: Dsui_2321 - site-specific recombinase, at 2,476,071 to 2,478,146 _2321 Position (kb) 2474 2475 2476 2477Strain fitness (log2 ratio) -2 -1 0 1at 2473.894 kb on + strand, within Dsui_2319at 2473.894 kb on + strand, within Dsui_2319at 2473.900 kb on + strand, within Dsui_2319at 2473.939 kb on - strandat 2473.975 kb on - strand, within Dsui_2319at 2474.018 kb on - strand, within Dsui_2319at 2474.052 kb on - strand, within Dsui_2319at 2474.113 kb on - strandat 2474.113 kb on - strand, within Dsui_2319at 2474.207 kb on + strand, within Dsui_2319at 2474.287 kb on + strand, within Dsui_2319at 2474.296 kb on + strand, within Dsui_2319at 2474.310 kb on - strand, within Dsui_2319at 2474.355 kb on + strand, within Dsui_2319at 2474.380 kb on + strand, within Dsui_2319at 2474.411 kb on - strand, within Dsui_2319at 2474.424 kb on + strand, within Dsui_2319at 2474.432 kb on - strand, within Dsui_2319at 2474.467 kb on + strand, within Dsui_2319at 2474.501 kb on - strandat 2474.511 kb on + strand, within Dsui_2319at 2474.613 kb on + strandat 2474.752 kb on - strandat 2474.767 kb on + strandat 2474.788 kb on - strandat 2474.969 kb on - strand, within Dsui_2320at 2475.103 kb on - strand, within Dsui_2320at 2475.220 kb on + strand, within Dsui_2320at 2475.376 kb on + strand, within Dsui_2320at 2475.532 kb on + strandat 2475.598 kb on + strandat 2475.631 kb on + strand, within Dsui_2320at 2475.698 kb on + strandat 2475.734 kb on + strand, within Dsui_2320at 2475.830 kb on + strandat 2475.911 kb on - strandat 2475.981 kb on - strandat 2475.981 kb on - strandat 2476.020 kb on + strandat 2476.020 kb on + strandat 2476.028 kb on - strandat 2476.038 kb on - strandat 2476.051 kb on - strandat 2476.134 kb on + strandat 2476.344 kb on - strand, within Dsui_2321at 2476.763 kb on - strand, within Dsui_2321at 2476.937 kb on - strand, within Dsui_2321at 2476.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,473,894 + Dsui_2319 0.19 +1.4
2,473,894 + Dsui_2319 0.19 +0.4
2,473,900 + Dsui_2319 0.19 +1.7
2,473,939 - +0.4
2,473,975 - Dsui_2319 0.27 +0.1
2,474,018 - Dsui_2319 0.31 +0.4
2,474,052 - Dsui_2319 0.35 +0.4
2,474,113 - +1.5
2,474,113 - Dsui_2319 0.41 +1.1
2,474,207 + Dsui_2319 0.51 -0.1
2,474,287 + Dsui_2319 0.59 -0.6
2,474,296 + Dsui_2319 0.60 -0.6
2,474,310 - Dsui_2319 0.62 -0.0
2,474,355 + Dsui_2319 0.67 -0.1
2,474,380 + Dsui_2319 0.69 +0.3
2,474,411 - Dsui_2319 0.72 +1.2
2,474,424 + Dsui_2319 0.74 -0.0
2,474,432 - Dsui_2319 0.75 -0.6
2,474,467 + Dsui_2319 0.78 +0.2
2,474,501 - +0.6
2,474,511 + Dsui_2319 0.83 -0.0
2,474,613 + -0.7
2,474,752 - -0.9
2,474,767 + -1.0
2,474,788 - -0.7
2,474,969 - Dsui_2320 0.11 -0.2
2,475,103 - Dsui_2320 0.22 -0.4
2,475,220 + Dsui_2320 0.32 +1.7
2,475,376 + Dsui_2320 0.45 -0.7
2,475,532 + +1.0
2,475,598 + +0.2
2,475,631 + Dsui_2320 0.67 -0.4
2,475,698 + +1.6
2,475,734 + Dsui_2320 0.76 -2.4
2,475,830 + +0.4
2,475,911 - -0.1
2,475,981 - -0.3
2,475,981 - -0.8
2,476,020 + -1.6
2,476,020 + +1.0
2,476,028 - -0.0
2,476,038 - -0.5
2,476,051 - -0.5
2,476,134 + -0.6
2,476,344 - Dsui_2321 0.13 -0.0
2,476,763 - Dsui_2321 0.33 +0.1
2,476,937 - Dsui_2321 0.42 +0.2
2,476,985 + +0.4

Or see this region's nucleotide sequence