Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2247 and Dsui_2248 are separated by 40 nucleotides Dsui_2248 and Dsui_2249 overlap by 4 nucleotides Dsui_2249 and Dsui_2250 are separated by 60 nucleotides
Dsui_2247: Dsui_2247 - cytochrome b, at 2,394,518 to 2,395,177
_2247
Dsui_2248: Dsui_2248 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,395,218 to 2,395,895
_2248
Dsui_2249: Dsui_2249 - signal transduction histidine kinase, at 2,395,892 to 2,397,259
_2249
Dsui_2250: Dsui_2250 - putative domain HDIG-containing protein, at 2,397,320 to 2,398,582
_2250
Position (kb)
2395
2396
2397
2398 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2394.993 kb on - strand, within Dsui_2247 at 2395.084 kb on - strand at 2395.194 kb on + strand at 2395.530 kb on - strand at 2395.698 kb on + strand, within Dsui_2248 at 2395.724 kb on + strand, within Dsui_2248 at 2395.755 kb on + strand, within Dsui_2248 at 2395.755 kb on + strand, within Dsui_2248 at 2395.783 kb on + strand at 2395.902 kb on + strand at 2395.902 kb on + strand at 2395.925 kb on + strand at 2395.954 kb on + strand at 2396.022 kb on - strand at 2396.297 kb on + strand, within Dsui_2249 at 2396.305 kb on - strand, within Dsui_2249 at 2396.369 kb on + strand, within Dsui_2249 at 2396.461 kb on - strand at 2396.467 kb on + strand, within Dsui_2249 at 2396.524 kb on - strand at 2396.539 kb on + strand, within Dsui_2249 at 2396.539 kb on + strand, within Dsui_2249 at 2396.539 kb on + strand at 2396.539 kb on + strand, within Dsui_2249 at 2396.547 kb on - strand at 2396.547 kb on - strand, within Dsui_2249 at 2396.547 kb on - strand at 2396.603 kb on + strand, within Dsui_2249 at 2396.611 kb on - strand at 2397.113 kb on + strand, within Dsui_2249 at 2397.114 kb on + strand, within Dsui_2249 at 2397.206 kb on + strand at 2397.291 kb on - strand at 2397.301 kb on - strand at 2397.326 kb on + strand at 2397.365 kb on + strand at 2397.479 kb on + strand, within Dsui_2250 at 2397.513 kb on + strand, within Dsui_2250 at 2397.513 kb on + strand at 2397.999 kb on + strand, within Dsui_2250 at 2398.056 kb on - strand at 2398.157 kb on + strand at 2398.251 kb on + strand, within Dsui_2250
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,394,993 - Dsui_2247 0.72 -0.8 2,395,084 - +0.4 2,395,194 + -0.9 2,395,530 - +0.4 2,395,698 + Dsui_2248 0.71 +1.3 2,395,724 + Dsui_2248 0.75 +1.1 2,395,755 + Dsui_2248 0.79 -0.2 2,395,755 + Dsui_2248 0.79 +0.4 2,395,783 + +0.4 2,395,902 + -1.7 2,395,902 + -0.0 2,395,925 + -2.7 2,395,954 + -1.2 2,396,022 - -0.4 2,396,297 + Dsui_2249 0.30 +1.4 2,396,305 - Dsui_2249 0.30 +0.5 2,396,369 + Dsui_2249 0.35 -1.6 2,396,461 - +0.6 2,396,467 + Dsui_2249 0.42 +0.2 2,396,524 - +0.4 2,396,539 + Dsui_2249 0.47 -0.1 2,396,539 + Dsui_2249 0.47 -0.5 2,396,539 + +0.9 2,396,539 + Dsui_2249 0.47 +0.7 2,396,547 - +0.9 2,396,547 - Dsui_2249 0.48 -1.1 2,396,547 - +1.9 2,396,603 + Dsui_2249 0.52 -0.1 2,396,611 - +0.4 2,397,113 + Dsui_2249 0.89 -1.2 2,397,114 + Dsui_2249 0.89 -0.1 2,397,206 + +1.9 2,397,291 - +1.9 2,397,301 - +1.9 2,397,326 + +0.9 2,397,365 + +0.1 2,397,479 + Dsui_2250 0.13 +0.4 2,397,513 + Dsui_2250 0.15 -2.3 2,397,513 + +1.9 2,397,999 + Dsui_2250 0.54 +0.4 2,398,056 - +2.9 2,398,157 + +0.9 2,398,251 + Dsui_2250 0.74 +0.1
Or see this region's nucleotide sequence