Strain Fitness in Dechlorosoma suillum PS around Dsui_2195

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2193 and Dsui_2194 are separated by 131 nucleotidesDsui_2194 and Dsui_2195 are separated by 46 nucleotidesDsui_2195 and Dsui_2196 are separated by 125 nucleotidesDsui_2196 and Dsui_2197 are separated by 15 nucleotides Dsui_2193: Dsui_2193 - squalene synthase HpnC, at 2,329,509 to 2,330,333 _2193 Dsui_2194: Dsui_2194 - tRNA-Leu, at 2,330,465 to 2,330,549 _2194 Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900 _2195 Dsui_2196: Dsui_2196 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,332,026 to 2,332,667 _2196 Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957 _2197 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2329.600 kb on + strandat 2329.753 kb on + strand, within Dsui_2193at 2329.761 kb on - strand, within Dsui_2193at 2329.761 kb on - strand, within Dsui_2193at 2329.761 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.780 kb on - strand, within Dsui_2193at 2329.856 kb on + strandat 2329.859 kb on - strand, within Dsui_2193at 2329.859 kb on - strand, within Dsui_2193at 2329.927 kb on - strand, within Dsui_2193at 2329.990 kb on + strandat 2330.013 kb on - strand, within Dsui_2193at 2330.209 kb on - strand, within Dsui_2193at 2330.213 kb on - strand, within Dsui_2193at 2330.266 kb on - strandat 2330.337 kb on - strandat 2330.368 kb on + strandat 2330.423 kb on + strandat 2330.423 kb on - strandat 2330.430 kb on - strandat 2330.673 kb on + strandat 2330.743 kb on + strand, within Dsui_2195at 2330.755 kb on + strand, within Dsui_2195at 2330.763 kb on + strand, within Dsui_2195at 2330.803 kb on + strand, within Dsui_2195at 2330.836 kb on + strand, within Dsui_2195at 2330.883 kb on + strand, within Dsui_2195at 2330.918 kb on + strand, within Dsui_2195at 2331.069 kb on + strand, within Dsui_2195at 2331.152 kb on + strand, within Dsui_2195at 2331.275 kb on - strandat 2331.357 kb on + strand, within Dsui_2195at 2331.427 kb on + strand, within Dsui_2195at 2331.444 kb on + strand, within Dsui_2195at 2331.477 kb on + strand, within Dsui_2195at 2331.485 kb on - strandat 2331.485 kb on - strand, within Dsui_2195at 2331.684 kb on + strand, within Dsui_2195at 2331.697 kb on - strandat 2331.699 kb on + strand, within Dsui_2195at 2331.699 kb on + strand, within Dsui_2195at 2331.751 kb on + strand, within Dsui_2195at 2331.808 kb on + strandat 2331.982 kb on + strandat 2331.990 kb on + strandat 2331.990 kb on + strandat 2331.990 kb on - strandat 2331.997 kb on - strandat 2332.062 kb on + strandat 2332.064 kb on - strandat 2332.070 kb on - strandat 2332.071 kb on - strandat 2332.143 kb on - strand, within Dsui_2196at 2332.146 kb on + strand, within Dsui_2196at 2332.158 kb on - strand, within Dsui_2196at 2332.183 kb on + strand, within Dsui_2196at 2332.385 kb on + strand, within Dsui_2196at 2332.608 kb on + strandat 2332.629 kb on + strandat 2332.629 kb on + strandat 2332.637 kb on - strandat 2332.639 kb on + strandat 2332.639 kb on + strandat 2332.726 kb on - strandat 2332.750 kb on - strandat 2332.876 kb on - strand, within Dsui_2197

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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2,329,600 + +1.0
2,329,753 + Dsui_2193 0.30 -1.7
2,329,761 - Dsui_2193 0.31 +1.1
2,329,761 - Dsui_2193 0.31 -1.0
2,329,761 - Dsui_2193 0.31 -0.1
2,329,780 - Dsui_2193 0.33 +1.3
2,329,780 - Dsui_2193 0.33 +0.2
2,329,780 - Dsui_2193 0.33 +0.5
2,329,780 - Dsui_2193 0.33 +1.0
2,329,856 + +2.0
2,329,859 - Dsui_2193 0.42 +0.5
2,329,859 - Dsui_2193 0.42 -0.2
2,329,927 - Dsui_2193 0.51 -0.5
2,329,990 + +2.0
2,330,013 - Dsui_2193 0.61 +0.8
2,330,209 - Dsui_2193 0.85 +0.3
2,330,213 - Dsui_2193 0.85 +0.4
2,330,266 - -0.4
2,330,337 - +0.1
2,330,368 + -0.1
2,330,423 + +0.1
2,330,423 - +0.0
2,330,430 - +1.7
2,330,673 + +0.8
2,330,743 + Dsui_2195 0.11 +0.4
2,330,755 + Dsui_2195 0.12 +1.1
2,330,763 + Dsui_2195 0.13 +0.9
2,330,803 + Dsui_2195 0.16 +0.1
2,330,836 + Dsui_2195 0.18 +1.0
2,330,883 + Dsui_2195 0.22 +0.9
2,330,918 + Dsui_2195 0.25 +0.9
2,331,069 + Dsui_2195 0.36 +1.4
2,331,152 + Dsui_2195 0.43 +1.4
2,331,275 - +3.0
2,331,357 + Dsui_2195 0.58 +0.8
2,331,427 + Dsui_2195 0.64 +0.9
2,331,444 + Dsui_2195 0.65 +0.1
2,331,477 + Dsui_2195 0.68 +1.2
2,331,485 - +0.4
2,331,485 - Dsui_2195 0.68 +0.3
2,331,684 + Dsui_2195 0.83 -0.2
2,331,697 - +0.4
2,331,699 + Dsui_2195 0.85 +0.8
2,331,699 + Dsui_2195 0.85 +0.2
2,331,751 + Dsui_2195 0.89 +0.5
2,331,808 + -0.7
2,331,982 + +0.1
2,331,990 + +0.1
2,331,990 + -0.3
2,331,990 - +0.9
2,331,997 - +1.2
2,332,062 + +0.5
2,332,064 - -1.4
2,332,070 - +1.0
2,332,071 - -1.2
2,332,143 - Dsui_2196 0.18 -2.7
2,332,146 + Dsui_2196 0.19 -2.0
2,332,158 - Dsui_2196 0.21 -2.4
2,332,183 + Dsui_2196 0.24 -1.2
2,332,385 + Dsui_2196 0.56 +0.5
2,332,608 + -3.1
2,332,629 + -3.0
2,332,629 + -1.9
2,332,637 - +0.1
2,332,639 + +1.6
2,332,639 + +2.0
2,332,726 - -1.5
2,332,750 - -1.1
2,332,876 - Dsui_2197 0.15 -1.4

Or see this region's nucleotide sequence