Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2193 and Dsui_2194 are separated by 131 nucleotides Dsui_2194 and Dsui_2195 are separated by 46 nucleotides Dsui_2195 and Dsui_2196 are separated by 125 nucleotides Dsui_2196 and Dsui_2197 are separated by 15 nucleotides
Dsui_2193: Dsui_2193 - squalene synthase HpnC, at 2,329,509 to 2,330,333
_2193
Dsui_2194: Dsui_2194 - tRNA-Leu, at 2,330,465 to 2,330,549
_2194
Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900
_2195
Dsui_2196: Dsui_2196 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,332,026 to 2,332,667
_2196
Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957
_2197
Position (kb)
2330
2331
2332 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2329.600 kb on + strand at 2329.753 kb on + strand, within Dsui_2193 at 2329.761 kb on - strand, within Dsui_2193 at 2329.761 kb on - strand, within Dsui_2193 at 2329.761 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.780 kb on - strand, within Dsui_2193 at 2329.856 kb on + strand at 2329.859 kb on - strand, within Dsui_2193 at 2329.859 kb on - strand, within Dsui_2193 at 2329.927 kb on - strand, within Dsui_2193 at 2329.990 kb on + strand at 2330.013 kb on - strand, within Dsui_2193 at 2330.209 kb on - strand, within Dsui_2193 at 2330.213 kb on - strand, within Dsui_2193 at 2330.266 kb on - strand at 2330.337 kb on - strand at 2330.368 kb on + strand at 2330.423 kb on + strand at 2330.423 kb on - strand at 2330.430 kb on - strand at 2330.673 kb on + strand at 2330.743 kb on + strand, within Dsui_2195 at 2330.755 kb on + strand, within Dsui_2195 at 2330.763 kb on + strand, within Dsui_2195 at 2330.803 kb on + strand, within Dsui_2195 at 2330.836 kb on + strand, within Dsui_2195 at 2330.883 kb on + strand, within Dsui_2195 at 2330.918 kb on + strand, within Dsui_2195 at 2331.069 kb on + strand, within Dsui_2195 at 2331.152 kb on + strand, within Dsui_2195 at 2331.275 kb on - strand at 2331.357 kb on + strand, within Dsui_2195 at 2331.427 kb on + strand, within Dsui_2195 at 2331.444 kb on + strand, within Dsui_2195 at 2331.477 kb on + strand, within Dsui_2195 at 2331.485 kb on - strand at 2331.485 kb on - strand, within Dsui_2195 at 2331.684 kb on + strand, within Dsui_2195 at 2331.697 kb on - strand at 2331.699 kb on + strand, within Dsui_2195 at 2331.699 kb on + strand, within Dsui_2195 at 2331.751 kb on + strand, within Dsui_2195 at 2331.808 kb on + strand at 2331.982 kb on + strand at 2331.990 kb on + strand at 2331.990 kb on + strand at 2331.990 kb on - strand at 2331.997 kb on - strand at 2332.062 kb on + strand at 2332.064 kb on - strand at 2332.070 kb on - strand at 2332.071 kb on - strand at 2332.143 kb on - strand, within Dsui_2196 at 2332.146 kb on + strand, within Dsui_2196 at 2332.158 kb on - strand, within Dsui_2196 at 2332.183 kb on + strand, within Dsui_2196 at 2332.385 kb on + strand, within Dsui_2196 at 2332.608 kb on + strand at 2332.629 kb on + strand at 2332.629 kb on + strand at 2332.637 kb on - strand at 2332.639 kb on + strand at 2332.639 kb on + strand at 2332.726 kb on - strand at 2332.750 kb on - strand at 2332.876 kb on - strand, within Dsui_2197
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,329,600 + +1.0 2,329,753 + Dsui_2193 0.30 -1.7 2,329,761 - Dsui_2193 0.31 +1.1 2,329,761 - Dsui_2193 0.31 -1.0 2,329,761 - Dsui_2193 0.31 -0.1 2,329,780 - Dsui_2193 0.33 +1.3 2,329,780 - Dsui_2193 0.33 +0.2 2,329,780 - Dsui_2193 0.33 +0.5 2,329,780 - Dsui_2193 0.33 +1.0 2,329,856 + +2.0 2,329,859 - Dsui_2193 0.42 +0.5 2,329,859 - Dsui_2193 0.42 -0.2 2,329,927 - Dsui_2193 0.51 -0.5 2,329,990 + +2.0 2,330,013 - Dsui_2193 0.61 +0.8 2,330,209 - Dsui_2193 0.85 +0.3 2,330,213 - Dsui_2193 0.85 +0.4 2,330,266 - -0.4 2,330,337 - +0.1 2,330,368 + -0.1 2,330,423 + +0.1 2,330,423 - +0.0 2,330,430 - +1.7 2,330,673 + +0.8 2,330,743 + Dsui_2195 0.11 +0.4 2,330,755 + Dsui_2195 0.12 +1.1 2,330,763 + Dsui_2195 0.13 +0.9 2,330,803 + Dsui_2195 0.16 +0.1 2,330,836 + Dsui_2195 0.18 +1.0 2,330,883 + Dsui_2195 0.22 +0.9 2,330,918 + Dsui_2195 0.25 +0.9 2,331,069 + Dsui_2195 0.36 +1.4 2,331,152 + Dsui_2195 0.43 +1.4 2,331,275 - +3.0 2,331,357 + Dsui_2195 0.58 +0.8 2,331,427 + Dsui_2195 0.64 +0.9 2,331,444 + Dsui_2195 0.65 +0.1 2,331,477 + Dsui_2195 0.68 +1.2 2,331,485 - +0.4 2,331,485 - Dsui_2195 0.68 +0.3 2,331,684 + Dsui_2195 0.83 -0.2 2,331,697 - +0.4 2,331,699 + Dsui_2195 0.85 +0.8 2,331,699 + Dsui_2195 0.85 +0.2 2,331,751 + Dsui_2195 0.89 +0.5 2,331,808 + -0.7 2,331,982 + +0.1 2,331,990 + +0.1 2,331,990 + -0.3 2,331,990 - +0.9 2,331,997 - +1.2 2,332,062 + +0.5 2,332,064 - -1.4 2,332,070 - +1.0 2,332,071 - -1.2 2,332,143 - Dsui_2196 0.18 -2.7 2,332,146 + Dsui_2196 0.19 -2.0 2,332,158 - Dsui_2196 0.21 -2.4 2,332,183 + Dsui_2196 0.24 -1.2 2,332,385 + Dsui_2196 0.56 +0.5 2,332,608 + -3.1 2,332,629 + -3.0 2,332,629 + -1.9 2,332,637 - +0.1 2,332,639 + +1.6 2,332,639 + +2.0 2,332,726 - -1.5 2,332,750 - -1.1 2,332,876 - Dsui_2197 0.15 -1.4
Or see this region's nucleotide sequence