Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2147 and Dsui_2148 are separated by 220 nucleotides Dsui_2148 and Dsui_2149 are separated by 201 nucleotides
Dsui_2147: Dsui_2147 - DNA recombination-dependent growth factor C, at 2,274,621 to 2,275,523
_2147
Dsui_2148: Dsui_2148 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,275,744 to 2,278,623
_2148
Dsui_2149: Dsui_2149 - DNA helicase, Rad3, at 2,278,825 to 2,280,777
_2149
Position (kb)
2275
2276
2277
2278
2279 Strain fitness (log2 ratio)
-1
0
1
2 at 2275.596 kb on - strand at 2275.596 kb on - strand at 2275.597 kb on - strand at 2275.748 kb on - strand at 2275.748 kb on - strand at 2275.748 kb on - strand at 2275.841 kb on + strand at 2275.964 kb on + strand at 2276.030 kb on - strand at 2276.087 kb on + strand, within Dsui_2148 at 2276.095 kb on - strand, within Dsui_2148 at 2276.095 kb on - strand, within Dsui_2148 at 2276.111 kb on - strand, within Dsui_2148 at 2276.111 kb on - strand, within Dsui_2148 at 2276.141 kb on + strand, within Dsui_2148 at 2276.159 kb on - strand, within Dsui_2148 at 2276.215 kb on - strand, within Dsui_2148 at 2276.391 kb on + strand, within Dsui_2148 at 2276.424 kb on - strand, within Dsui_2148 at 2276.785 kb on - strand, within Dsui_2148 at 2276.882 kb on - strand, within Dsui_2148 at 2276.944 kb on - strand, within Dsui_2148 at 2276.954 kb on - strand, within Dsui_2148 at 2277.098 kb on - strand, within Dsui_2148 at 2277.159 kb on + strand at 2277.316 kb on + strand at 2277.406 kb on + strand, within Dsui_2148 at 2277.421 kb on + strand at 2277.463 kb on + strand, within Dsui_2148 at 2277.577 kb on - strand, within Dsui_2148 at 2277.692 kb on + strand, within Dsui_2148 at 2277.810 kb on + strand at 2277.888 kb on + strand at 2278.089 kb on + strand, within Dsui_2148 at 2278.125 kb on + strand, within Dsui_2148 at 2278.191 kb on + strand at 2278.307 kb on + strand at 2278.336 kb on - strand at 2278.363 kb on - strand at 2278.543 kb on - strand at 2278.565 kb on - strand at 2278.565 kb on - strand at 2278.631 kb on - strand at 2278.664 kb on + strand at 2279.015 kb on - strand at 2279.136 kb on + strand, within Dsui_2149 at 2279.230 kb on + strand, within Dsui_2149 at 2279.290 kb on + strand, within Dsui_2149 at 2279.362 kb on + strand, within Dsui_2149 at 2279.362 kb on + strand, within Dsui_2149 at 2279.370 kb on - strand at 2279.370 kb on - strand at 2279.593 kb on + strand, within Dsui_2149
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,275,596 - +1.2 2,275,596 - -0.6 2,275,597 - +0.2 2,275,748 - -0.2 2,275,748 - +0.6 2,275,748 - -0.1 2,275,841 + +0.6 2,275,964 + -0.8 2,276,030 - +1.1 2,276,087 + Dsui_2148 0.12 +0.1 2,276,095 - Dsui_2148 0.12 +0.5 2,276,095 - Dsui_2148 0.12 +0.1 2,276,111 - Dsui_2148 0.13 +0.5 2,276,111 - Dsui_2148 0.13 +0.2 2,276,141 + Dsui_2148 0.14 -0.2 2,276,159 - Dsui_2148 0.14 +0.3 2,276,215 - Dsui_2148 0.16 +0.6 2,276,391 + Dsui_2148 0.22 +0.3 2,276,424 - Dsui_2148 0.24 +0.5 2,276,785 - Dsui_2148 0.36 +0.4 2,276,882 - Dsui_2148 0.40 +0.5 2,276,944 - Dsui_2148 0.42 +0.5 2,276,954 - Dsui_2148 0.42 +0.3 2,277,098 - Dsui_2148 0.47 -0.4 2,277,159 + -0.0 2,277,316 + +0.6 2,277,406 + Dsui_2148 0.58 +0.3 2,277,421 + +1.0 2,277,463 + Dsui_2148 0.60 +0.6 2,277,577 - Dsui_2148 0.64 +0.6 2,277,692 + Dsui_2148 0.68 +0.0 2,277,810 + +1.0 2,277,888 + +2.0 2,278,089 + Dsui_2148 0.81 +1.0 2,278,125 + Dsui_2148 0.83 +0.4 2,278,191 + +2.0 2,278,307 + -0.4 2,278,336 - +0.8 2,278,363 - +0.4 2,278,543 - +0.7 2,278,565 - +0.5 2,278,565 - -0.3 2,278,631 - +0.9 2,278,664 + +2.0 2,279,015 - -0.0 2,279,136 + Dsui_2149 0.16 +0.2 2,279,230 + Dsui_2149 0.21 -0.1 2,279,290 + Dsui_2149 0.24 +0.1 2,279,362 + Dsui_2149 0.27 -1.1 2,279,362 + Dsui_2149 0.27 -0.4 2,279,370 - -0.6 2,279,370 - -0.0 2,279,593 + Dsui_2149 0.39 -0.8
Or see this region's nucleotide sequence