Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2037 and Dsui_2038 are separated by 4 nucleotides Dsui_2038 and Dsui_2039 are separated by 227 nucleotides Dsui_2039 and Dsui_2040 are separated by 26 nucleotides Dsui_2040 and Dsui_2041 are separated by 60 nucleotides
Dsui_2037: Dsui_2037 - putative alpha/beta hydrolase, at 2,156,716 to 2,157,663
_2037
Dsui_2038: Dsui_2038 - putative regulatory protein, FmdB family, at 2,157,668 to 2,157,901
_2038
Dsui_2039: Dsui_2039 - OAH/OAS sulfhydrylase, at 2,158,129 to 2,159,415
_2039
Dsui_2040: Dsui_2040 - putative CoA-binding protein, at 2,159,442 to 2,159,900
_2040
Dsui_2041: Dsui_2041 - enoyl-CoA hydratase/carnithine racemase, at 2,159,961 to 2,160,746
_2041
Position (kb)
2158
2159
2160 Strain fitness (log2 ratio)
-2
-1
0
1 at 2157.195 kb on - strand, within Dsui_2037 at 2157.323 kb on + strand, within Dsui_2037 at 2157.401 kb on + strand, within Dsui_2037 at 2157.421 kb on - strand, within Dsui_2037 at 2157.615 kb on - strand at 2157.630 kb on - strand at 2157.693 kb on + strand, within Dsui_2038 at 2157.694 kb on - strand, within Dsui_2038 at 2157.824 kb on + strand, within Dsui_2038 at 2157.832 kb on - strand, within Dsui_2038 at 2157.834 kb on + strand, within Dsui_2038 at 2157.834 kb on + strand, within Dsui_2038 at 2157.834 kb on + strand, within Dsui_2038 at 2157.842 kb on - strand, within Dsui_2038 at 2157.853 kb on + strand, within Dsui_2038 at 2157.861 kb on - strand, within Dsui_2038 at 2157.872 kb on + strand, within Dsui_2038 at 2157.897 kb on + strand at 2157.903 kb on + strand at 2157.988 kb on + strand at 2158.014 kb on - strand at 2158.083 kb on + strand at 2158.083 kb on + strand at 2158.083 kb on - strand at 2158.091 kb on - strand at 2158.377 kb on + strand, within Dsui_2039 at 2158.411 kb on - strand, within Dsui_2039 at 2158.447 kb on + strand, within Dsui_2039 at 2158.458 kb on + strand, within Dsui_2039 at 2158.490 kb on + strand, within Dsui_2039 at 2158.542 kb on + strand, within Dsui_2039 at 2158.558 kb on - strand, within Dsui_2039 at 2158.559 kb on - strand, within Dsui_2039 at 2158.617 kb on - strand, within Dsui_2039 at 2158.678 kb on + strand, within Dsui_2039 at 2158.691 kb on - strand, within Dsui_2039 at 2158.758 kb on + strand at 2158.781 kb on + strand at 2158.801 kb on + strand, within Dsui_2039 at 2158.814 kb on - strand, within Dsui_2039 at 2158.832 kb on + strand, within Dsui_2039 at 2158.842 kb on + strand, within Dsui_2039 at 2158.884 kb on - strand, within Dsui_2039 at 2158.932 kb on + strand, within Dsui_2039 at 2158.965 kb on + strand at 2158.973 kb on - strand, within Dsui_2039 at 2158.978 kb on - strand, within Dsui_2039 at 2159.225 kb on - strand, within Dsui_2039 at 2159.250 kb on - strand, within Dsui_2039 at 2159.260 kb on + strand, within Dsui_2039 at 2159.268 kb on - strand, within Dsui_2039 at 2159.419 kb on - strand at 2159.429 kb on - strand at 2159.450 kb on + strand at 2159.450 kb on + strand at 2159.458 kb on - strand at 2159.608 kb on + strand, within Dsui_2040 at 2159.615 kb on + strand, within Dsui_2040 at 2159.719 kb on + strand, within Dsui_2040 at 2159.854 kb on - strand, within Dsui_2040 at 2159.872 kb on + strand at 2159.876 kb on + strand at 2159.880 kb on - strand at 2159.945 kb on + strand at 2159.951 kb on - strand at 2159.978 kb on - strand at 2160.064 kb on + strand, within Dsui_2041 at 2160.110 kb on - strand, within Dsui_2041 at 2160.117 kb on - strand, within Dsui_2041 at 2160.119 kb on + strand at 2160.220 kb on - strand, within Dsui_2041 at 2160.246 kb on - strand, within Dsui_2041 at 2160.261 kb on + strand at 2160.269 kb on - strand, within Dsui_2041 at 2160.277 kb on - strand at 2160.324 kb on - strand, within Dsui_2041 at 2160.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 2,157,195 - Dsui_2037 0.51 +0.6 2,157,323 + Dsui_2037 0.64 -0.4 2,157,401 + Dsui_2037 0.72 +0.4 2,157,421 - Dsui_2037 0.74 +0.9 2,157,615 - +0.9 2,157,630 - +0.2 2,157,693 + Dsui_2038 0.11 -0.2 2,157,694 - Dsui_2038 0.11 -0.6 2,157,824 + Dsui_2038 0.67 -0.0 2,157,832 - Dsui_2038 0.70 -0.5 2,157,834 + Dsui_2038 0.71 +0.0 2,157,834 + Dsui_2038 0.71 +0.7 2,157,834 + Dsui_2038 0.71 -0.7 2,157,842 - Dsui_2038 0.74 -0.7 2,157,853 + Dsui_2038 0.79 -0.6 2,157,861 - Dsui_2038 0.82 -0.0 2,157,872 + Dsui_2038 0.87 +0.6 2,157,897 + +0.8 2,157,903 + +0.2 2,157,988 + -0.3 2,158,014 - +0.3 2,158,083 + -0.0 2,158,083 + -0.3 2,158,083 - -1.5 2,158,091 - -0.8 2,158,377 + Dsui_2039 0.19 -1.0 2,158,411 - Dsui_2039 0.22 -0.4 2,158,447 + Dsui_2039 0.25 +1.2 2,158,458 + Dsui_2039 0.26 +1.4 2,158,490 + Dsui_2039 0.28 +0.9 2,158,542 + Dsui_2039 0.32 -0.5 2,158,558 - Dsui_2039 0.33 -1.5 2,158,559 - Dsui_2039 0.33 -0.1 2,158,617 - Dsui_2039 0.38 -0.9 2,158,678 + Dsui_2039 0.43 -0.9 2,158,691 - Dsui_2039 0.44 -0.7 2,158,758 + -0.6 2,158,781 + +1.2 2,158,801 + Dsui_2039 0.52 +0.9 2,158,814 - Dsui_2039 0.53 -0.7 2,158,832 + Dsui_2039 0.55 +0.8 2,158,842 + Dsui_2039 0.55 +0.1 2,158,884 - Dsui_2039 0.59 -0.2 2,158,932 + Dsui_2039 0.62 -0.6 2,158,965 + +0.9 2,158,973 - Dsui_2039 0.66 -0.2 2,158,978 - Dsui_2039 0.66 -0.5 2,159,225 - Dsui_2039 0.85 -0.5 2,159,250 - Dsui_2039 0.87 -0.0 2,159,260 + Dsui_2039 0.88 -0.0 2,159,268 - Dsui_2039 0.89 +0.2 2,159,419 - -0.1 2,159,429 - +0.0 2,159,450 + -0.7 2,159,450 + -0.9 2,159,458 - -0.4 2,159,608 + Dsui_2040 0.36 +0.1 2,159,615 + Dsui_2040 0.38 +0.2 2,159,719 + Dsui_2040 0.60 +0.0 2,159,854 - Dsui_2040 0.90 +0.0 2,159,872 + +0.3 2,159,876 + -0.4 2,159,880 - +0.8 2,159,945 + +0.9 2,159,951 - +0.0 2,159,978 - -1.0 2,160,064 + Dsui_2041 0.13 -0.2 2,160,110 - Dsui_2041 0.19 +0.5 2,160,117 - Dsui_2041 0.20 +0.1 2,160,119 + +0.9 2,160,220 - Dsui_2041 0.33 -0.5 2,160,246 - Dsui_2041 0.36 -2.1 2,160,261 + +0.9 2,160,269 - Dsui_2041 0.39 -0.9 2,160,277 - +0.3 2,160,324 - Dsui_2041 0.46 +0.3 2,160,324 - +1.3
Or see this region's nucleotide sequence