Strain Fitness in Dechlorosoma suillum PS around Dsui_1340

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1339 and Dsui_1340 are separated by 101 nucleotidesDsui_1340 and Dsui_1341 are separated by 24 nucleotidesDsui_1341 and Dsui_1342 are separated by 44 nucleotides Dsui_1339: Dsui_1339 - 23S ribosomal RNA, at 1,395,608 to 1,398,489 _1339 Dsui_1340: Dsui_1340 - 5S ribosomal RNA, at 1,398,591 to 1,398,704 _1340 Dsui_1341: Dsui_1341 - methionine-S-sulfoxide reductase, at 1,398,729 to 1,399,430 _1341 Dsui_1342: Dsui_1342 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,399,475 to 1,399,819 _1342 Position (kb) 1398 1399Strain fitness (log2 ratio) -1 0 1at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.805 kb on + strand, within Dsui_1341at 1398.818 kb on + strand, within Dsui_1341at 1398.849 kb on + strand, within Dsui_1341at 1398.870 kb on - strand, within Dsui_1341at 1398.885 kb on + strand, within Dsui_1341at 1398.903 kb on - strand, within Dsui_1341at 1398.918 kb on - strand, within Dsui_1341at 1398.960 kb on + strand, within Dsui_1341at 1399.000 kb on - strand, within Dsui_1341at 1399.010 kb on - strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.055 kb on + strand, within Dsui_1341at 1399.063 kb on - strand, within Dsui_1341at 1399.069 kb on - strand, within Dsui_1341at 1399.129 kb on + strand, within Dsui_1341at 1399.129 kb on + strand, within Dsui_1341at 1399.136 kb on + strand, within Dsui_1341at 1399.136 kb on + strand, within Dsui_1341at 1399.137 kb on - strand, within Dsui_1341at 1399.144 kb on - strand, within Dsui_1341at 1399.158 kb on + strand, within Dsui_1341at 1399.166 kb on - strand, within Dsui_1341at 1399.181 kb on - strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.188 kb on + strand, within Dsui_1341at 1399.227 kb on + strand, within Dsui_1341at 1399.240 kb on - strand, within Dsui_1341at 1399.244 kb on + strand, within Dsui_1341at 1399.301 kb on + strand, within Dsui_1341at 1399.307 kb on + strand, within Dsui_1341at 1399.347 kb on + strand, within Dsui_1341at 1399.354 kb on + strand, within Dsui_1341at 1399.365 kb on - strandat 1399.390 kb on + strandat 1399.415 kb on + strandat 1399.477 kb on - strandat 1399.482 kb on - strandat 1399.487 kb on - strandat 1399.499 kb on + strandat 1399.502 kb on - strandat 1399.507 kb on - strandat 1399.514 kb on + strand, within Dsui_1342at 1399.563 kb on - strand, within Dsui_1342at 1399.582 kb on + strand, within Dsui_1342at 1399.680 kb on - strand, within Dsui_1342

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,398,805 + Dsui_1341 0.11 -0.8
1,398,805 + Dsui_1341 0.11 -0.0
1,398,805 + Dsui_1341 0.11 +0.0
1,398,805 + Dsui_1341 0.11 -0.1
1,398,818 + Dsui_1341 0.13 +0.2
1,398,849 + Dsui_1341 0.17 -0.4
1,398,870 - Dsui_1341 0.20 +0.1
1,398,885 + Dsui_1341 0.22 -0.1
1,398,903 - Dsui_1341 0.25 -0.1
1,398,918 - Dsui_1341 0.27 -0.1
1,398,960 + Dsui_1341 0.33 -0.6
1,399,000 - Dsui_1341 0.39 -0.0
1,399,010 - Dsui_1341 0.40 +0.2
1,399,055 + Dsui_1341 0.46 +0.1
1,399,055 + Dsui_1341 0.46 -0.4
1,399,055 + Dsui_1341 0.46 +0.7
1,399,063 - Dsui_1341 0.48 +0.2
1,399,069 - Dsui_1341 0.48 -0.0
1,399,129 + Dsui_1341 0.57 +0.4
1,399,129 + Dsui_1341 0.57 +0.4
1,399,136 + Dsui_1341 0.58 +0.5
1,399,136 + Dsui_1341 0.58 +0.3
1,399,137 - Dsui_1341 0.58 -0.0
1,399,144 - Dsui_1341 0.59 -0.0
1,399,158 + Dsui_1341 0.61 -0.2
1,399,166 - Dsui_1341 0.62 +0.1
1,399,181 - Dsui_1341 0.64 +0.5
1,399,188 + Dsui_1341 0.65 -0.2
1,399,188 + Dsui_1341 0.65 +0.4
1,399,188 + Dsui_1341 0.65 +0.2
1,399,227 + Dsui_1341 0.71 +0.2
1,399,240 - Dsui_1341 0.73 +0.1
1,399,244 + Dsui_1341 0.73 +0.1
1,399,301 + Dsui_1341 0.81 -0.2
1,399,307 + Dsui_1341 0.82 +0.3
1,399,347 + Dsui_1341 0.88 +0.2
1,399,354 + Dsui_1341 0.89 +0.1
1,399,365 - -0.4
1,399,390 + +0.4
1,399,415 + +0.0
1,399,477 - +0.2
1,399,482 - +0.8
1,399,487 - +0.0
1,399,499 + +0.2
1,399,502 - +0.2
1,399,507 - +0.1
1,399,514 + Dsui_1342 0.11 +0.1
1,399,563 - Dsui_1342 0.26 +0.0
1,399,582 + Dsui_1342 0.31 +0.2
1,399,680 - Dsui_1342 0.59 +0.3

Or see this region's nucleotide sequence