Strain Fitness in Dechlorosoma suillum PS around Dsui_1221

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1220 and Dsui_1221 are separated by 163 nucleotidesDsui_1221 and Dsui_1222 are separated by 45 nucleotides Dsui_1220: Dsui_1220 - gamma-glutamyl phosphate reductase, at 1,275,398 to 1,276,654 _1220 Dsui_1221: Dsui_1221 - hypothetical protein, at 1,276,818 to 1,277,090 _1221 Dsui_1222: Dsui_1222 - DNA polymerase III, delta subunit, at 1,277,136 to 1,278,137 _1222 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -2 -1 0 1at 1276.691 kb on + strandat 1276.757 kb on - strandat 1276.822 kb on + strandat 1276.830 kb on - strandat 1276.848 kb on + strand, within Dsui_1221at 1276.920 kb on + strand, within Dsui_1221at 1276.937 kb on + strand, within Dsui_1221at 1277.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,276,691 + +0.2
1,276,757 - -0.1
1,276,822 + -1.9
1,276,830 - -1.2
1,276,848 + Dsui_1221 0.11 -1.0
1,276,920 + Dsui_1221 0.37 -1.7
1,276,937 + Dsui_1221 0.44 -1.2
1,277,085 + -0.4

Or see this region's nucleotide sequence