Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1218 and Dsui_1219 are separated by 56 nucleotides Dsui_1219 and Dsui_1220 are separated by 136 nucleotides Dsui_1220 and Dsui_1221 are separated by 163 nucleotides Dsui_1221 and Dsui_1222 are separated by 45 nucleotides
Dsui_1218: Dsui_1218 - O-6-methylguanine DNA methyltransferase, at 1,274,135 to 1,274,623
_1218
Dsui_1219: Dsui_1219 - aspartyl-tRNA synthetase, at 1,274,680 to 1,275,261
_1219
Dsui_1220: Dsui_1220 - gamma-glutamyl phosphate reductase, at 1,275,398 to 1,276,654
_1220
Dsui_1221: Dsui_1221 - hypothetical protein, at 1,276,818 to 1,277,090
_1221
Dsui_1222: Dsui_1222 - DNA polymerase III, delta subunit, at 1,277,136 to 1,278,137
_1222
Position (kb)
1275
1276
1277 Strain fitness (log2 ratio)
-2
-1
0
1 at 1274.589 kb on + strand at 1274.589 kb on + strand at 1274.670 kb on + strand at 1274.678 kb on - strand at 1274.681 kb on + strand at 1274.725 kb on - strand at 1274.735 kb on - strand at 1274.762 kb on - strand, within Dsui_1219 at 1274.900 kb on + strand, within Dsui_1219 at 1274.996 kb on + strand, within Dsui_1219 at 1275.076 kb on + strand, within Dsui_1219 at 1275.089 kb on + strand, within Dsui_1219 at 1275.089 kb on + strand, within Dsui_1219 at 1275.150 kb on + strand, within Dsui_1219 at 1275.218 kb on + strand at 1275.309 kb on - strand at 1275.309 kb on - strand at 1275.309 kb on - strand at 1275.309 kb on - strand at 1275.319 kb on - strand at 1275.394 kb on + strand at 1276.691 kb on + strand at 1276.757 kb on - strand at 1276.822 kb on + strand at 1276.830 kb on - strand at 1276.848 kb on + strand, within Dsui_1221 at 1276.920 kb on + strand, within Dsui_1221 at 1276.937 kb on + strand, within Dsui_1221 at 1277.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 1,274,589 + -0.5 1,274,589 + +0.5 1,274,670 + -0.2 1,274,678 - +0.1 1,274,681 + +0.2 1,274,725 - +0.1 1,274,735 - +0.2 1,274,762 - Dsui_1219 0.14 +0.5 1,274,900 + Dsui_1219 0.38 +0.1 1,274,996 + Dsui_1219 0.54 +0.8 1,275,076 + Dsui_1219 0.68 -1.0 1,275,089 + Dsui_1219 0.70 -0.2 1,275,089 + Dsui_1219 0.70 +0.2 1,275,150 + Dsui_1219 0.81 +0.1 1,275,218 + +0.5 1,275,309 - +0.8 1,275,309 - +1.2 1,275,309 - -0.1 1,275,309 - +0.5 1,275,319 - -0.1 1,275,394 + +0.1 1,276,691 + +0.2 1,276,757 - -0.1 1,276,822 + -1.9 1,276,830 - -1.2 1,276,848 + Dsui_1221 0.11 -1.0 1,276,920 + Dsui_1221 0.37 -1.7 1,276,937 + Dsui_1221 0.44 -1.2 1,277,085 + -0.4
Or see this region's nucleotide sequence