Strain Fitness in Dechlorosoma suillum PS around Dsui_1116

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1115 and Dsui_1116 are separated by 131 nucleotidesDsui_1116 and Dsui_1117 are separated by 78 nucleotidesDsui_1117 and Dsui_1118 are separated by 123 nucleotides Dsui_1115: Dsui_1115 - putative acyl-CoA transferase/carnitine dehydratase, at 1,162,526 to 1,163,692 _1115 Dsui_1116: Dsui_1116 - methyl-accepting chemotaxis protein, at 1,163,824 to 1,165,431 _1116 Dsui_1117: Dsui_1117 - hemerythrin-like metal-binding domain-containing protein, at 1,165,510 to 1,165,926 _1117 Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946 _1118 Position (kb) 1163 1164 1165 1166Strain fitness (log2 ratio) -3 -2 -1 0 1at 1163.152 kb on - strand, within Dsui_1115at 1163.365 kb on + strand, within Dsui_1115at 1163.365 kb on + strand, within Dsui_1115at 1163.392 kb on + strand, within Dsui_1115at 1163.424 kb on - strand, within Dsui_1115at 1163.427 kb on - strand, within Dsui_1115at 1163.473 kb on - strand, within Dsui_1115at 1163.476 kb on + strand, within Dsui_1115at 1163.491 kb on - strand, within Dsui_1115at 1163.540 kb on + strand, within Dsui_1115at 1163.540 kb on + strand, within Dsui_1115at 1163.551 kb on - strand, within Dsui_1115at 1163.618 kb on + strandat 1163.676 kb on + strandat 1163.694 kb on - strandat 1163.711 kb on + strandat 1163.758 kb on - strandat 1163.782 kb on + strandat 1163.782 kb on + strandat 1163.840 kb on - strandat 1163.877 kb on + strandat 1163.928 kb on + strandat 1163.973 kb on + strandat 1164.016 kb on - strand, within Dsui_1116at 1164.028 kb on - strand, within Dsui_1116at 1164.032 kb on + strand, within Dsui_1116at 1164.048 kb on - strand, within Dsui_1116at 1164.093 kb on - strand, within Dsui_1116at 1164.098 kb on - strand, within Dsui_1116at 1164.098 kb on - strand, within Dsui_1116at 1164.098 kb on - strand, within Dsui_1116at 1164.171 kb on - strand, within Dsui_1116at 1164.179 kb on + strand, within Dsui_1116at 1164.442 kb on + strand, within Dsui_1116at 1164.477 kb on + strand, within Dsui_1116at 1164.546 kb on + strand, within Dsui_1116at 1164.624 kb on + strand, within Dsui_1116at 1164.632 kb on - strand, within Dsui_1116at 1164.658 kb on + strand, within Dsui_1116at 1164.785 kb on - strand, within Dsui_1116at 1165.137 kb on + strand, within Dsui_1116at 1165.188 kb on + strand, within Dsui_1116at 1165.275 kb on + strandat 1165.709 kb on + strand, within Dsui_1117at 1165.736 kb on + strandat 1165.817 kb on - strand, within Dsui_1117at 1165.817 kb on - strand, within Dsui_1117at 1165.969 kb on - strandat 1166.010 kb on + strandat 1166.018 kb on - strandat 1166.062 kb on + strandat 1166.183 kb on - strand, within Dsui_1118at 1166.193 kb on - strand, within Dsui_1118at 1166.212 kb on + strand, within Dsui_1118at 1166.261 kb on + strand, within Dsui_1118at 1166.278 kb on + strand, within Dsui_1118at 1166.286 kb on - strand, within Dsui_1118at 1166.345 kb on - strand, within Dsui_1118

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,163,152 - Dsui_1115 0.54 -0.6
1,163,365 + Dsui_1115 0.72 -0.8
1,163,365 + Dsui_1115 0.72 -1.8
1,163,392 + Dsui_1115 0.74 +0.6
1,163,424 - Dsui_1115 0.77 -0.2
1,163,427 - Dsui_1115 0.77 -0.7
1,163,473 - Dsui_1115 0.81 -0.1
1,163,476 + Dsui_1115 0.81 -0.3
1,163,491 - Dsui_1115 0.83 -0.9
1,163,540 + Dsui_1115 0.87 -0.1
1,163,540 + Dsui_1115 0.87 -0.6
1,163,551 - Dsui_1115 0.88 -1.2
1,163,618 + -0.7
1,163,676 + -0.5
1,163,694 - -1.0
1,163,711 + +0.5
1,163,758 - -0.8
1,163,782 + -0.6
1,163,782 + -0.5
1,163,840 - -0.0
1,163,877 + +0.7
1,163,928 + -0.1
1,163,973 + -1.3
1,164,016 - Dsui_1116 0.12 -0.2
1,164,028 - Dsui_1116 0.13 -1.5
1,164,032 + Dsui_1116 0.13 -0.2
1,164,048 - Dsui_1116 0.14 -1.6
1,164,093 - Dsui_1116 0.17 -1.2
1,164,098 - Dsui_1116 0.17 -2.6
1,164,098 - Dsui_1116 0.17 -0.8
1,164,098 - Dsui_1116 0.17 +0.2
1,164,171 - Dsui_1116 0.22 -0.4
1,164,179 + Dsui_1116 0.22 -0.1
1,164,442 + Dsui_1116 0.38 -0.1
1,164,477 + Dsui_1116 0.41 -0.5
1,164,546 + Dsui_1116 0.45 -0.6
1,164,624 + Dsui_1116 0.50 -0.0
1,164,632 - Dsui_1116 0.50 -0.7
1,164,658 + Dsui_1116 0.52 -0.0
1,164,785 - Dsui_1116 0.60 -0.7
1,165,137 + Dsui_1116 0.82 -0.1
1,165,188 + Dsui_1116 0.85 -0.3
1,165,275 + +0.4
1,165,709 + Dsui_1117 0.48 -0.4
1,165,736 + -0.5
1,165,817 - Dsui_1117 0.74 -0.4
1,165,817 - Dsui_1117 0.74 -0.4
1,165,969 - -0.5
1,166,010 + -1.4
1,166,018 - -1.0
1,166,062 + -1.2
1,166,183 - Dsui_1118 0.15 -0.1
1,166,193 - Dsui_1118 0.16 +0.2
1,166,212 + Dsui_1118 0.18 -3.6
1,166,261 + Dsui_1118 0.24 -1.3
1,166,278 + Dsui_1118 0.25 -0.3
1,166,286 - Dsui_1118 0.26 -0.8
1,166,345 - Dsui_1118 0.33 -0.7

Or see this region's nucleotide sequence