Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0930 and Dsui_0931 are separated by 168 nucleotides Dsui_0931 and Dsui_0932 are separated by 15 nucleotides Dsui_0932 and Dsui_0933 are separated by 196 nucleotides
Dsui_0930: Dsui_0930 - transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains, at 958,448 to 959,797
_0930
Dsui_0931: Dsui_0931 - thiol-disulfide isomerase-like thioredoxin, at 959,966 to 960,472
_0931
Dsui_0932: Dsui_0932 - hypothetical protein, at 960,488 to 961,192
_0932
Dsui_0933: Dsui_0933 - DNA/RNA helicase, superfamily I, at 961,389 to 963,398
_0933
Position (kb) 959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 959.064 kb on - strand, within Dsui_0930 at 959.064 kb on - strand, within Dsui_0930 at 959.185 kb on + strand, within Dsui_0930 at 959.246 kb on - strand, within Dsui_0930 at 959.502 kb on + strand, within Dsui_0930 at 959.533 kb on + strand, within Dsui_0930 at 959.537 kb on + strand, within Dsui_0930 at 959.568 kb on + strand, within Dsui_0930 at 959.620 kb on - strand, within Dsui_0930 at 959.695 kb on - strand at 959.700 kb on - strand at 959.747 kb on - strand at 959.747 kb on - strand at 959.747 kb on - strand at 959.784 kb on - strand at 959.819 kb on + strand at 959.835 kb on + strand at 959.858 kb on + strand at 959.858 kb on + strand at 959.866 kb on - strand at 959.868 kb on + strand at 959.944 kb on - strand at 959.950 kb on + strand at 959.950 kb on + strand at 959.972 kb on - strand at 960.035 kb on + strand, within Dsui_0931 at 960.090 kb on - strand, within Dsui_0931 at 960.090 kb on - strand, within Dsui_0931 at 960.100 kb on - strand, within Dsui_0931 at 960.124 kb on + strand, within Dsui_0931 at 960.169 kb on - strand, within Dsui_0931 at 960.196 kb on - strand, within Dsui_0931 at 960.213 kb on - strand, within Dsui_0931 at 960.273 kb on - strand, within Dsui_0931 at 960.349 kb on - strand, within Dsui_0931 at 960.445 kb on + strand at 960.445 kb on + strand at 960.448 kb on - strand at 960.453 kb on - strand at 960.453 kb on - strand at 960.575 kb on + strand, within Dsui_0932 at 960.597 kb on - strand, within Dsui_0932 at 960.663 kb on - strand, within Dsui_0932 at 960.711 kb on + strand, within Dsui_0932 at 960.870 kb on - strand, within Dsui_0932 at 961.001 kb on - strand, within Dsui_0932 at 961.032 kb on - strand at 961.087 kb on - strand, within Dsui_0932 at 961.089 kb on + strand, within Dsui_0932 at 961.089 kb on + strand, within Dsui_0932 at 961.089 kb on + strand, within Dsui_0932 at 961.097 kb on - strand, within Dsui_0932 at 961.097 kb on - strand, within Dsui_0932 at 961.122 kb on - strand at 961.177 kb on - strand at 961.346 kb on - strand at 961.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 959,064 - Dsui_0930 0.46 +1.2 959,064 - Dsui_0930 0.46 -0.0 959,185 + Dsui_0930 0.55 +0.4 959,246 - Dsui_0930 0.59 +0.8 959,502 + Dsui_0930 0.78 -1.0 959,533 + Dsui_0930 0.80 +0.5 959,537 + Dsui_0930 0.81 -1.0 959,568 + Dsui_0930 0.83 -3.1 959,620 - Dsui_0930 0.87 +0.3 959,695 - -0.6 959,700 - +0.7 959,747 - -0.3 959,747 - -1.4 959,747 - -0.0 959,784 - +1.7 959,819 + -0.5 959,835 + -0.3 959,858 + -0.5 959,858 + +0.2 959,866 - +0.2 959,868 + -0.8 959,944 - +0.8 959,950 + -0.1 959,950 + -1.4 959,972 - +0.5 960,035 + Dsui_0931 0.14 -0.4 960,090 - Dsui_0931 0.24 -0.4 960,090 - Dsui_0931 0.24 -0.2 960,100 - Dsui_0931 0.26 -0.8 960,124 + Dsui_0931 0.31 +1.0 960,169 - Dsui_0931 0.40 +0.2 960,196 - Dsui_0931 0.45 +1.0 960,213 - Dsui_0931 0.49 +0.1 960,273 - Dsui_0931 0.61 -0.3 960,349 - Dsui_0931 0.76 +0.6 960,445 + +1.3 960,445 + +0.2 960,448 - +0.2 960,453 - -1.7 960,453 - -0.3 960,575 + Dsui_0932 0.12 -0.1 960,597 - Dsui_0932 0.15 -0.4 960,663 - Dsui_0932 0.25 +0.7 960,711 + Dsui_0932 0.32 -0.2 960,870 - Dsui_0932 0.54 +0.4 961,001 - Dsui_0932 0.73 +1.1 961,032 - +1.4 961,087 - Dsui_0932 0.85 -0.3 961,089 + Dsui_0932 0.85 -0.2 961,089 + Dsui_0932 0.85 +0.4 961,089 + Dsui_0932 0.85 +0.5 961,097 - Dsui_0932 0.86 -1.4 961,097 - Dsui_0932 0.86 -1.0 961,122 - -1.1 961,177 - +0.4 961,346 - -0.6 961,404 + +0.1
Or see this region's nucleotide sequence