Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0893 and Dsui_0894 are separated by 0 nucleotides Dsui_0894 and Dsui_0895 are separated by 83 nucleotides Dsui_0895 and Dsui_0896 are separated by 18 nucleotides
Dsui_0893: Dsui_0893 - rare lipoprotein A, at 907,234 to 908,274
_0893
Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899
_0894
Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321
_0895
Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450
_0896
Position (kb)
908
909
910
911 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 907.276 kb on - strand at 907.477 kb on + strand, within Dsui_0893 at 907.505 kb on + strand, within Dsui_0893 at 907.510 kb on + strand, within Dsui_0893 at 907.542 kb on + strand, within Dsui_0893 at 907.652 kb on + strand, within Dsui_0893 at 907.665 kb on - strand at 907.988 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.181 kb on + strand at 908.186 kb on + strand at 908.237 kb on - strand at 908.247 kb on - strand at 908.281 kb on - strand at 908.342 kb on + strand at 908.375 kb on + strand at 908.375 kb on + strand at 908.383 kb on - strand at 908.422 kb on - strand at 908.428 kb on + strand at 908.428 kb on + strand at 908.528 kb on + strand at 908.592 kb on + strand, within Dsui_0894 at 908.649 kb on - strand, within Dsui_0894 at 908.670 kb on + strand, within Dsui_0894 at 908.761 kb on + strand, within Dsui_0894 at 908.849 kb on + strand, within Dsui_0894 at 908.910 kb on + strand, within Dsui_0894 at 908.953 kb on - strand, within Dsui_0894 at 909.014 kb on + strand, within Dsui_0894 at 909.024 kb on + strand, within Dsui_0894 at 909.031 kb on + strand, within Dsui_0894 at 909.039 kb on - strand, within Dsui_0894 at 909.097 kb on - strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.152 kb on - strand, within Dsui_0894 at 909.179 kb on - strand at 909.203 kb on - strand at 909.215 kb on - strand, within Dsui_0894 at 909.237 kb on - strand, within Dsui_0894 at 909.269 kb on - strand, within Dsui_0894 at 909.289 kb on - strand, within Dsui_0894 at 909.336 kb on + strand, within Dsui_0894 at 909.379 kb on - strand, within Dsui_0894 at 909.403 kb on - strand, within Dsui_0894 at 909.405 kb on + strand, within Dsui_0894 at 909.446 kb on + strand, within Dsui_0894 at 909.446 kb on + strand, within Dsui_0894 at 909.492 kb on + strand, within Dsui_0894 at 909.496 kb on - strand, within Dsui_0894 at 909.527 kb on - strand, within Dsui_0894 at 909.610 kb on - strand, within Dsui_0894 at 909.677 kb on - strand, within Dsui_0894 at 909.800 kb on - strand, within Dsui_0894 at 909.824 kb on - strand, within Dsui_0894 at 909.950 kb on + strand, within Dsui_0894 at 910.037 kb on + strand at 910.046 kb on - strand, within Dsui_0894 at 910.053 kb on + strand, within Dsui_0894 at 910.129 kb on + strand at 910.171 kb on + strand, within Dsui_0894 at 910.179 kb on - strand, within Dsui_0894 at 910.184 kb on + strand, within Dsui_0894 at 910.235 kb on - strand at 910.287 kb on + strand, within Dsui_0894 at 910.287 kb on + strand, within Dsui_0894 at 910.357 kb on + strand, within Dsui_0894 at 910.402 kb on + strand, within Dsui_0894 at 910.460 kb on + strand, within Dsui_0894 at 910.512 kb on + strand, within Dsui_0894 at 910.592 kb on - strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.641 kb on + strand at 910.658 kb on - strand at 910.667 kb on + strand at 910.727 kb on - strand at 910.916 kb on - strand at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.182 kb on - strand, within Dsui_0895 at 911.274 kb on - strand, within Dsui_0895 at 911.278 kb on - strand, within Dsui_0895 at 911.331 kb on + strand at 911.331 kb on + strand at 911.373 kb on + strand at 911.380 kb on - strand at 911.398 kb on - strand at 911.405 kb on + strand at 911.405 kb on - strand at 911.410 kb on - strand at 911.413 kb on - strand at 911.420 kb on - strand at 911.551 kb on - strand at 911.628 kb on - strand at 911.638 kb on - strand at 911.735 kb on + strand, within Dsui_0896 at 911.786 kb on + strand at 911.794 kb on - strand at 911.824 kb on + strand, within Dsui_0896 at 911.873 kb on + strand, within Dsui_0896
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 907,276 - -0.6 907,477 + Dsui_0893 0.23 +0.2 907,505 + Dsui_0893 0.26 +1.2 907,510 + Dsui_0893 0.27 -1.6 907,542 + Dsui_0893 0.30 -0.9 907,652 + Dsui_0893 0.40 -0.8 907,665 - +1.8 907,988 - Dsui_0893 0.72 -1.4 908,111 - Dsui_0893 0.84 +0.2 908,111 - Dsui_0893 0.84 -1.7 908,181 + -1.2 908,186 + -0.9 908,237 - +0.8 908,247 - +0.2 908,281 - +0.6 908,342 + -1.2 908,375 + +0.8 908,375 + +0.2 908,383 - +0.2 908,422 - -0.8 908,428 + -0.5 908,428 + -0.3 908,528 + +0.4 908,592 + Dsui_0894 0.12 -0.9 908,649 - Dsui_0894 0.14 -0.5 908,670 + Dsui_0894 0.15 -0.7 908,761 + Dsui_0894 0.19 +0.3 908,849 + Dsui_0894 0.22 -0.2 908,910 + Dsui_0894 0.24 -0.0 908,953 - Dsui_0894 0.26 +1.2 909,014 + Dsui_0894 0.28 -1.4 909,024 + Dsui_0894 0.29 -1.2 909,031 + Dsui_0894 0.29 -0.2 909,039 - Dsui_0894 0.29 -0.6 909,097 - Dsui_0894 0.31 +0.4 909,115 + Dsui_0894 0.32 -0.6 909,115 + Dsui_0894 0.32 -1.5 909,115 + Dsui_0894 0.32 -1.5 909,152 - Dsui_0894 0.33 -1.2 909,179 - -0.2 909,203 - +0.6 909,215 - Dsui_0894 0.36 +0.9 909,237 - Dsui_0894 0.37 +0.2 909,269 - Dsui_0894 0.38 +0.4 909,289 - Dsui_0894 0.39 +0.6 909,336 + Dsui_0894 0.40 -0.3 909,379 - Dsui_0894 0.42 -0.7 909,403 - Dsui_0894 0.43 -0.0 909,405 + Dsui_0894 0.43 -0.8 909,446 + Dsui_0894 0.45 +0.1 909,446 + Dsui_0894 0.45 -0.3 909,492 + Dsui_0894 0.46 +0.7 909,496 - Dsui_0894 0.47 -0.3 909,527 - Dsui_0894 0.48 +0.9 909,610 - Dsui_0894 0.51 +0.5 909,677 - Dsui_0894 0.53 -0.0 909,800 - Dsui_0894 0.58 +0.3 909,824 - Dsui_0894 0.59 +0.1 909,950 + Dsui_0894 0.64 -1.9 910,037 + -0.5 910,046 - Dsui_0894 0.67 +0.6 910,053 + Dsui_0894 0.68 -0.3 910,129 + -0.2 910,171 + Dsui_0894 0.72 +0.1 910,179 - Dsui_0894 0.73 -0.2 910,184 + Dsui_0894 0.73 -0.9 910,235 - +0.5 910,287 + Dsui_0894 0.77 -0.5 910,287 + Dsui_0894 0.77 -0.1 910,357 + Dsui_0894 0.79 -1.6 910,402 + Dsui_0894 0.81 -1.3 910,460 + Dsui_0894 0.83 +0.1 910,512 + Dsui_0894 0.85 -0.8 910,592 - Dsui_0894 0.88 +0.4 910,631 + Dsui_0894 0.90 -1.3 910,631 + Dsui_0894 0.90 +1.8 910,641 + +0.6 910,658 - +0.8 910,667 + +2.4 910,727 - +0.2 910,916 - +0.1 911,155 - Dsui_0895 0.51 +0.1 911,155 - Dsui_0895 0.51 +0.1 911,155 - Dsui_0895 0.51 +1.3 911,182 - Dsui_0895 0.59 -0.0 911,274 - Dsui_0895 0.86 +1.3 911,278 - Dsui_0895 0.87 +0.8 911,331 + +0.8 911,331 + +0.1 911,373 + +1.0 911,380 - +0.4 911,398 - +1.3 911,405 + +0.3 911,405 - +0.2 911,410 - +0.2 911,413 - -0.5 911,420 - -0.4 911,551 - +0.1 911,628 - -0.1 911,638 - -0.4 911,735 + Dsui_0896 0.13 -0.2 911,786 + +1.5 911,794 - +0.2 911,824 + Dsui_0896 0.16 -0.4 911,873 + Dsui_0896 0.17 -0.7
Or see this region's nucleotide sequence