Strain Fitness in Dechlorosoma suillum PS around Dsui_0894

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0893 and Dsui_0894 are separated by 0 nucleotidesDsui_0894 and Dsui_0895 are separated by 83 nucleotidesDsui_0895 and Dsui_0896 are separated by 18 nucleotides Dsui_0893: Dsui_0893 - rare lipoprotein A, at 907,234 to 908,274 _0893 Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899 _0894 Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321 _0895 Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450 _0896 Position (kb) 908 909 910 911Strain fitness (log2 ratio) -2 -1 0 1 2at 907.276 kb on - strandat 907.477 kb on + strand, within Dsui_0893at 907.505 kb on + strand, within Dsui_0893at 907.510 kb on + strand, within Dsui_0893at 907.542 kb on + strand, within Dsui_0893at 907.652 kb on + strand, within Dsui_0893at 907.665 kb on - strandat 907.988 kb on - strand, within Dsui_0893at 908.111 kb on - strand, within Dsui_0893at 908.111 kb on - strand, within Dsui_0893at 908.181 kb on + strandat 908.186 kb on + strandat 908.237 kb on - strandat 908.247 kb on - strandat 908.281 kb on - strandat 908.342 kb on + strandat 908.375 kb on + strandat 908.375 kb on + strandat 908.383 kb on - strandat 908.422 kb on - strandat 908.428 kb on + strandat 908.428 kb on + strandat 908.528 kb on + strandat 908.592 kb on + strand, within Dsui_0894at 908.649 kb on - strand, within Dsui_0894at 908.670 kb on + strand, within Dsui_0894at 908.761 kb on + strand, within Dsui_0894at 908.849 kb on + strand, within Dsui_0894at 908.910 kb on + strand, within Dsui_0894at 908.953 kb on - strand, within Dsui_0894at 909.014 kb on + strand, within Dsui_0894at 909.024 kb on + strand, within Dsui_0894at 909.031 kb on + strand, within Dsui_0894at 909.039 kb on - strand, within Dsui_0894at 909.097 kb on - strand, within Dsui_0894at 909.115 kb on + strand, within Dsui_0894at 909.115 kb on + strand, within Dsui_0894at 909.115 kb on + strand, within Dsui_0894at 909.152 kb on - strand, within Dsui_0894at 909.179 kb on - strandat 909.203 kb on - strandat 909.215 kb on - strand, within Dsui_0894at 909.237 kb on - strand, within Dsui_0894at 909.269 kb on - strand, within Dsui_0894at 909.289 kb on - strand, within Dsui_0894at 909.336 kb on + strand, within Dsui_0894at 909.379 kb on - strand, within Dsui_0894at 909.403 kb on - strand, within Dsui_0894at 909.405 kb on + strand, within Dsui_0894at 909.446 kb on + strand, within Dsui_0894at 909.446 kb on + strand, within Dsui_0894at 909.492 kb on + strand, within Dsui_0894at 909.496 kb on - strand, within Dsui_0894at 909.527 kb on - strand, within Dsui_0894at 909.610 kb on - strand, within Dsui_0894at 909.677 kb on - strand, within Dsui_0894at 909.800 kb on - strand, within Dsui_0894at 909.824 kb on - strand, within Dsui_0894at 909.950 kb on + strand, within Dsui_0894at 910.037 kb on + strandat 910.046 kb on - strand, within Dsui_0894at 910.053 kb on + strand, within Dsui_0894at 910.129 kb on + strandat 910.171 kb on + strand, within Dsui_0894at 910.179 kb on - strand, within Dsui_0894at 910.184 kb on + strand, within Dsui_0894at 910.235 kb on - strandat 910.287 kb on + strand, within Dsui_0894at 910.287 kb on + strand, within Dsui_0894at 910.357 kb on + strand, within Dsui_0894at 910.402 kb on + strand, within Dsui_0894at 910.460 kb on + strand, within Dsui_0894at 910.512 kb on + strand, within Dsui_0894at 910.592 kb on - strand, within Dsui_0894at 910.631 kb on + strand, within Dsui_0894at 910.631 kb on + strand, within Dsui_0894at 910.641 kb on + strandat 910.658 kb on - strandat 910.667 kb on + strandat 910.727 kb on - strandat 910.916 kb on - strandat 911.155 kb on - strand, within Dsui_0895at 911.155 kb on - strand, within Dsui_0895at 911.155 kb on - strand, within Dsui_0895at 911.182 kb on - strand, within Dsui_0895at 911.274 kb on - strand, within Dsui_0895at 911.278 kb on - strand, within Dsui_0895at 911.331 kb on + strandat 911.331 kb on + strandat 911.373 kb on + strandat 911.380 kb on - strandat 911.398 kb on - strandat 911.405 kb on + strandat 911.405 kb on - strandat 911.410 kb on - strandat 911.413 kb on - strandat 911.420 kb on - strandat 911.551 kb on - strandat 911.628 kb on - strandat 911.638 kb on - strandat 911.735 kb on + strand, within Dsui_0896at 911.786 kb on + strandat 911.794 kb on - strandat 911.824 kb on + strand, within Dsui_0896at 911.873 kb on + strand, within Dsui_0896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
907,276 - -0.6
907,477 + Dsui_0893 0.23 +0.2
907,505 + Dsui_0893 0.26 +1.2
907,510 + Dsui_0893 0.27 -1.6
907,542 + Dsui_0893 0.30 -0.9
907,652 + Dsui_0893 0.40 -0.8
907,665 - +1.8
907,988 - Dsui_0893 0.72 -1.4
908,111 - Dsui_0893 0.84 +0.2
908,111 - Dsui_0893 0.84 -1.7
908,181 + -1.2
908,186 + -0.9
908,237 - +0.8
908,247 - +0.2
908,281 - +0.6
908,342 + -1.2
908,375 + +0.8
908,375 + +0.2
908,383 - +0.2
908,422 - -0.8
908,428 + -0.5
908,428 + -0.3
908,528 + +0.4
908,592 + Dsui_0894 0.12 -0.9
908,649 - Dsui_0894 0.14 -0.5
908,670 + Dsui_0894 0.15 -0.7
908,761 + Dsui_0894 0.19 +0.3
908,849 + Dsui_0894 0.22 -0.2
908,910 + Dsui_0894 0.24 -0.0
908,953 - Dsui_0894 0.26 +1.2
909,014 + Dsui_0894 0.28 -1.4
909,024 + Dsui_0894 0.29 -1.2
909,031 + Dsui_0894 0.29 -0.2
909,039 - Dsui_0894 0.29 -0.6
909,097 - Dsui_0894 0.31 +0.4
909,115 + Dsui_0894 0.32 -0.6
909,115 + Dsui_0894 0.32 -1.5
909,115 + Dsui_0894 0.32 -1.5
909,152 - Dsui_0894 0.33 -1.2
909,179 - -0.2
909,203 - +0.6
909,215 - Dsui_0894 0.36 +0.9
909,237 - Dsui_0894 0.37 +0.2
909,269 - Dsui_0894 0.38 +0.4
909,289 - Dsui_0894 0.39 +0.6
909,336 + Dsui_0894 0.40 -0.3
909,379 - Dsui_0894 0.42 -0.7
909,403 - Dsui_0894 0.43 -0.0
909,405 + Dsui_0894 0.43 -0.8
909,446 + Dsui_0894 0.45 +0.1
909,446 + Dsui_0894 0.45 -0.3
909,492 + Dsui_0894 0.46 +0.7
909,496 - Dsui_0894 0.47 -0.3
909,527 - Dsui_0894 0.48 +0.9
909,610 - Dsui_0894 0.51 +0.5
909,677 - Dsui_0894 0.53 -0.0
909,800 - Dsui_0894 0.58 +0.3
909,824 - Dsui_0894 0.59 +0.1
909,950 + Dsui_0894 0.64 -1.9
910,037 + -0.5
910,046 - Dsui_0894 0.67 +0.6
910,053 + Dsui_0894 0.68 -0.3
910,129 + -0.2
910,171 + Dsui_0894 0.72 +0.1
910,179 - Dsui_0894 0.73 -0.2
910,184 + Dsui_0894 0.73 -0.9
910,235 - +0.5
910,287 + Dsui_0894 0.77 -0.5
910,287 + Dsui_0894 0.77 -0.1
910,357 + Dsui_0894 0.79 -1.6
910,402 + Dsui_0894 0.81 -1.3
910,460 + Dsui_0894 0.83 +0.1
910,512 + Dsui_0894 0.85 -0.8
910,592 - Dsui_0894 0.88 +0.4
910,631 + Dsui_0894 0.90 -1.3
910,631 + Dsui_0894 0.90 +1.8
910,641 + +0.6
910,658 - +0.8
910,667 + +2.4
910,727 - +0.2
910,916 - +0.1
911,155 - Dsui_0895 0.51 +0.1
911,155 - Dsui_0895 0.51 +0.1
911,155 - Dsui_0895 0.51 +1.3
911,182 - Dsui_0895 0.59 -0.0
911,274 - Dsui_0895 0.86 +1.3
911,278 - Dsui_0895 0.87 +0.8
911,331 + +0.8
911,331 + +0.1
911,373 + +1.0
911,380 - +0.4
911,398 - +1.3
911,405 + +0.3
911,405 - +0.2
911,410 - +0.2
911,413 - -0.5
911,420 - -0.4
911,551 - +0.1
911,628 - -0.1
911,638 - -0.4
911,735 + Dsui_0896 0.13 -0.2
911,786 + +1.5
911,794 - +0.2
911,824 + Dsui_0896 0.16 -0.4
911,873 + Dsui_0896 0.17 -0.7

Or see this region's nucleotide sequence