Strain Fitness in Dechlorosoma suillum PS around Dsui_0328

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0327 and Dsui_0328 are separated by 282 nucleotidesDsui_0328 and Dsui_0329 are separated by 49 nucleotides Dsui_0327: Dsui_0327 - transcriptional regulator, at 333,595 to 334,293 _0327 Dsui_0328: Dsui_0328 - fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly, at 334,576 to 336,405 _0328 Dsui_0329: Dsui_0329 - PAS domain S-box, at 336,455 to 339,163 _0329 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2at 333.820 kb on - strand, within Dsui_0327at 333.820 kb on - strand, within Dsui_0327at 333.820 kb on - strand, within Dsui_0327at 333.826 kb on - strand, within Dsui_0327at 334.120 kb on - strand, within Dsui_0327at 334.209 kb on - strand, within Dsui_0327at 334.239 kb on - strandat 334.241 kb on - strandat 334.281 kb on - strandat 334.300 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.430 kb on + strandat 334.454 kb on + strandat 334.484 kb on - strandat 334.500 kb on + strandat 334.592 kb on + strandat 334.602 kb on + strandat 334.623 kb on - strandat 334.629 kb on - strandat 334.658 kb on + strandat 334.675 kb on - strandat 334.709 kb on + strandat 334.709 kb on + strandat 334.712 kb on - strandat 334.717 kb on - strandat 334.776 kb on + strand, within Dsui_0328at 334.783 kb on + strand, within Dsui_0328at 334.783 kb on + strand, within Dsui_0328at 334.791 kb on - strand, within Dsui_0328at 334.885 kb on - strand, within Dsui_0328at 334.907 kb on + strand, within Dsui_0328at 334.915 kb on - strand, within Dsui_0328at 334.915 kb on - strand, within Dsui_0328at 335.017 kb on - strand, within Dsui_0328at 335.031 kb on + strand, within Dsui_0328at 335.044 kb on - strand, within Dsui_0328at 335.059 kb on - strandat 335.065 kb on + strand, within Dsui_0328at 335.079 kb on - strand, within Dsui_0328at 335.126 kb on + strand, within Dsui_0328at 335.153 kb on + strand, within Dsui_0328at 335.220 kb on - strand, within Dsui_0328at 335.466 kb on + strand, within Dsui_0328at 335.474 kb on - strand, within Dsui_0328at 335.497 kb on + strand, within Dsui_0328at 335.609 kb on + strand, within Dsui_0328at 335.634 kb on - strand, within Dsui_0328at 335.697 kb on + strand, within Dsui_0328at 335.705 kb on - strand, within Dsui_0328at 335.724 kb on - strand, within Dsui_0328at 335.731 kb on - strand, within Dsui_0328at 335.737 kb on + strand, within Dsui_0328at 335.739 kb on - strand, within Dsui_0328at 335.890 kb on + strand, within Dsui_0328at 335.890 kb on + strand, within Dsui_0328at 335.952 kb on - strand, within Dsui_0328at 336.067 kb on - strand, within Dsui_0328at 336.136 kb on + strand, within Dsui_0328at 336.152 kb on - strand, within Dsui_0328at 336.152 kb on - strand, within Dsui_0328at 336.230 kb on - strandat 336.330 kb on + strandat 336.330 kb on + strandat 336.333 kb on - strandat 336.391 kb on - strandat 336.394 kb on + strandat 336.465 kb on - strandat 336.484 kb on - strandat 336.595 kb on - strandat 336.689 kb on - strandat 336.765 kb on + strand, within Dsui_0329at 336.803 kb on - strandat 336.843 kb on - strand, within Dsui_0329at 336.905 kb on - strand, within Dsui_0329at 337.106 kb on + strand, within Dsui_0329at 337.111 kb on + strand, within Dsui_0329at 337.114 kb on - strand, within Dsui_0329at 337.134 kb on + strand, within Dsui_0329at 337.160 kb on + strand, within Dsui_0329at 337.160 kb on + strand, within Dsui_0329at 337.160 kb on + strand, within Dsui_0329at 337.165 kb on + strand, within Dsui_0329at 337.168 kb on - strandat 337.183 kb on + strand, within Dsui_0329at 337.183 kb on + strand, within Dsui_0329at 337.192 kb on + strand, within Dsui_0329at 337.209 kb on + strand, within Dsui_0329at 337.217 kb on - strand, within Dsui_0329at 337.217 kb on - strand, within Dsui_0329at 337.401 kb on + strand, within Dsui_0329

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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333,820 - Dsui_0327 0.32 +0.9
333,820 - Dsui_0327 0.32 +2.5
333,820 - Dsui_0327 0.32 +0.3
333,826 - Dsui_0327 0.33 -1.0
334,120 - Dsui_0327 0.75 +0.6
334,209 - Dsui_0327 0.88 +0.5
334,239 - +0.3
334,241 - +1.7
334,281 - +0.5
334,300 - -0.5
334,391 - +0.2
334,391 - +0.9
334,391 - +0.3
334,391 - +0.5
334,391 - -0.1
334,430 + +0.3
334,454 + +0.9
334,484 - +0.3
334,500 + +0.3
334,592 + +1.3
334,602 + +0.1
334,623 - +0.5
334,629 - -1.1
334,658 + -0.4
334,675 - +0.3
334,709 + -0.0
334,709 + +0.0
334,712 - +0.0
334,717 - -0.0
334,776 + Dsui_0328 0.11 +0.8
334,783 + Dsui_0328 0.11 +0.2
334,783 + Dsui_0328 0.11 +1.0
334,791 - Dsui_0328 0.12 +0.4
334,885 - Dsui_0328 0.17 +2.1
334,907 + Dsui_0328 0.18 +0.7
334,915 - Dsui_0328 0.19 -1.9
334,915 - Dsui_0328 0.19 +0.5
335,017 - Dsui_0328 0.24 +0.6
335,031 + Dsui_0328 0.25 +0.5
335,044 - Dsui_0328 0.26 -0.6
335,059 - -0.1
335,065 + Dsui_0328 0.27 +0.1
335,079 - Dsui_0328 0.27 +0.5
335,126 + Dsui_0328 0.30 +0.5
335,153 + Dsui_0328 0.32 +0.8
335,220 - Dsui_0328 0.35 +0.3
335,466 + Dsui_0328 0.49 +0.9
335,474 - Dsui_0328 0.49 +0.2
335,497 + Dsui_0328 0.50 +0.0
335,609 + Dsui_0328 0.56 +1.5
335,634 - Dsui_0328 0.58 +1.1
335,697 + Dsui_0328 0.61 +0.4
335,705 - Dsui_0328 0.62 -0.0
335,724 - Dsui_0328 0.63 +0.1
335,731 - Dsui_0328 0.63 +0.6
335,737 + Dsui_0328 0.63 -0.0
335,739 - Dsui_0328 0.64 +0.2
335,890 + Dsui_0328 0.72 -0.1
335,890 + Dsui_0328 0.72 -1.7
335,952 - Dsui_0328 0.75 +0.6
336,067 - Dsui_0328 0.81 -0.6
336,136 + Dsui_0328 0.85 +0.5
336,152 - Dsui_0328 0.86 +0.7
336,152 - Dsui_0328 0.86 -0.5
336,230 - +0.6
336,330 + +1.3
336,330 + +0.0
336,333 - +0.4
336,391 - +2.3
336,394 + +0.5
336,465 - -0.7
336,484 - -1.3
336,595 - -0.6
336,689 - +0.7
336,765 + Dsui_0329 0.11 +0.1
336,803 - -0.5
336,843 - Dsui_0329 0.14 -0.3
336,905 - Dsui_0329 0.17 -0.7
337,106 + Dsui_0329 0.24 +0.2
337,111 + Dsui_0329 0.24 -1.9
337,114 - Dsui_0329 0.24 -1.9
337,134 + Dsui_0329 0.25 +0.4
337,160 + Dsui_0329 0.26 +0.6
337,160 + Dsui_0329 0.26 +0.1
337,160 + Dsui_0329 0.26 +0.2
337,165 + Dsui_0329 0.26 -0.2
337,168 - +0.3
337,183 + Dsui_0329 0.27 +0.3
337,183 + Dsui_0329 0.27 -0.2
337,192 + Dsui_0329 0.27 +0.2
337,209 + Dsui_0329 0.28 -0.4
337,217 - Dsui_0329 0.28 +0.8
337,217 - Dsui_0329 0.28 -0.8
337,401 + Dsui_0329 0.35 -0.4

Or see this region's nucleotide sequence